Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq7860 132 5e-26 seq862 131 2e-25 seq524375 120 3e-22 seq5622 111 2e-19 seq4549 111 2e-19 seq214152 82.4 8e-11 seq13424 82.4 8e-11 >seq7860 Length=10955 Score = 132 bits (146), Expect = 5e-26 Identities = 158/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 161788 CAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTC 161847 ||| | || || || |||| |||||| || |||||||| ||||| | || || || ||| Sbjct 6691 CAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTTGGACTAATAGGTTTC 6632 Query 161848 ATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGCTATTGC 161906 ||| | ||||| |||||||||||||| ||| || | | || ||||| ||||| || || Sbjct 6631 ATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGC 6573 Query 161907 TTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGACAGTC 161966 ||||||| ||| |||||||||||||| || || | || ||||| || || ||||| Sbjct 6572 ATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCTTGATTTATCCACTAGGTCAGTC 6513 Query 161967 GTCCTGGTTCTTCGCGCCATCGTTTGGGGTTG 161998 |||||||| ||||| ||||| |||| Sbjct 6512 TGGTTGGTTCTTTGCGCCTAGTTTTGGTGTTG 6481 >seq862 Length=327473 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 162079 GGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTC 162138 ||| | ||||||| |||| |||| | ||||||||| |||| || | ||||| || | Sbjct 255128 GGTGTATTGGGTGCTGCTCTGCTATGTGCTATTCATGGTGCTACCATAGAAAATACTTTA 255187 Query 162139 TACCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAG 162198 | |||||||||| |||||||| ||| | ||| || || | || |||| || || Sbjct 255188 TTTGAAGATGGTGATGGTGCAAATACATTCCATGCTATTAACCCAACTCAAGTTGAAGAA 255247 Query 162199 ACTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGT 162258 ||||| || ||||| || | ||||| || ||||| || ||||| || ||| ||||| Sbjct 255248 ACTTATTCAATGGTCACCACTAACCGCTTTTGGTCCCAAATCTTTGGGATTACTTTTTCC 255307 Query 162259 AATAAGCGTTGGTTGCATTTCTTTATGCTCTTCGT 162293 ||||| | |||||| |||||||||||| | || || Sbjct 255308 AATAAACATTGGTTACATTTCTTTATGTTTTTTGT 255342 >seq524375 Length=364 Score = 120 bits (132), Expect = 3e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 |||||||| ||||| || || | |||||||| || |||||||||| || || || Sbjct 196 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 255 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATCGCTGCTCCC 159922 |||||||| || || ||| | ||||| | || || | ||||||||||||||||| Sbjct 256 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTTATTATTGCCTTCATCGCTGCTCCT 315 Query 159923 CCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTC 159963 ||||||||||||||||| |||||||| || || |||| || Sbjct 316 CCTGTGGACATCGATGGTATCCGTGAGCCTGTTTCTGGCTC 356 >seq5622 Length=97820 Score = 111 bits (122), Expect = 2e-19 Identities = 110/141 (78%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 162395 ATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCAT 162454 || |||||||||| || ||||||||||| || | || || ||||||||| || |||| | Sbjct 54979 ATACTGAATTTGAGACTTTCTACACCAAAAAAAATCTTTTAAATGAAGGTATTTGTGCTT 54920 Query 162455 GGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCCTA 162514 || ||||| | |||||||| ||||| ||| || ||||||||||||| ||||| || Sbjct 54919 GGATGGCAGCTCAAGATCAACCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCC 54860 Query 162515 GAGGTAACGCACTGTGAATGG 162535 | || ||||| || | ||||| Sbjct 54859 GTGGAAACGCTCT-TTAATGG 54840 >seq4549 Length=62305 Score = 111 bits (122), Expect = 2e-19 Identities = 180/259 (69%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 162157 GCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTTACTCGATGGTTACT 162216 |||||||| ||| |||||| || || |||| | | ||||| || ||||| || Sbjct 53445 GCAAATACATTCCGTGCTTTTAACATAACTCAAGCTAAATAAACTTATTCAATGGTCACC 53386 Query 162217 GCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCAT 162276 || |||| || ||||| || ||||| | |||||||| |||| ||||||| || Sbjct 53385 GCTAACCACTTTTGGTCCCAAATCTTTGAGGTTGCTTTTTCCGATAAATGTTGGTTACAC 53326 Query 162277 TTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGA 162336 |||||||| | || || || | | ||| | || | || || | || || |||| Sbjct 53325 TTCTTTATATTATTTGTACCAATAACTGGTTTATGAATGAGGGCTCTTGGAATAGTTGGT 53266 Query 162337 CTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGAT 162396 || |||| || || ||||| || ||||| | | ||| || || |||||||| | ||| Sbjct 53265 CTACCTCTGAACCTACGTGCCTATGACTTCATTTTTCAAGAAATCCGTGCAGCATAAGAT 53206 Query 162397 CCTGAATTTGAAACCTTCT 162415 ||||||||||| || |||| Sbjct 53205 CCTGAATTTGAGACTTTCT 53187 >seq214152 Length=122 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/106 (79%), Gaps = 3/106 (3%) Strand=Plus/Plus Query 161829 TTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCC 161887 ||| ||| ||||||||||||||||||| || |||||| | ||||| ||| | | | | Sbjct 19 TTTGGCT-TGATTGGATTCATGCTTCGCCAATTTGAATTGGCTCGCTCTGTGCAAT-TAC 76 Query 161888 GTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGT 161933 | ||||| || || |||||||| ||||| |||||| | |||||||| Sbjct 77 GACCTTATAACGCCATTGCTTTTTCTGGACCTATTTCCGTTTTTGT 122 >seq13424 Length=38927 Score = 82.4 bits (90), Expect = 8e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 160520 GGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTC 160579 || || ||||||||||||||||| || || || || || ||| | || |||||||| Sbjct 6338 GGCCGATTGATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACATTTCTTCCTA 6279 Query 160580 GCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGC 160614 || ||||||||||| || || ||||||||||| || Sbjct 6278 GCGGCTTGGCCTGTAGTAGGTATCTGGTTCACCGC 6244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547572091437000