Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq7860 129 7e-25 seq524375 111 2e-19 seq862 109 7e-19 seq345864 100 4e-16 seq13424 84.2 3e-11 >seq7860 Length=10955 Score = 129 bits (142), Expect = 7e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 190260 CAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTC 190319 ||| | || || || ||| ||||||| || |||||||| ||||| | ||||| || ||| Sbjct 6691 CAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTTGGACTAATAGGTTTC 6632 Query 190320 ATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAATGCTATTGC 190378 ||| | ||||| |||||||| || || ||| || | | || ||||| ||||| || || Sbjct 6631 ATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGC 6573 Query 190379 GTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATC 190438 ||||||| ||| || |||||||||||| || || | || || || || ||||| || Sbjct 6572 ATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCTTGATTTATCCACTAGGTCAGTC 6513 Query 190439 GAGTTGGTTCTTCGCGCC 190456 |||||||||| ||||| Sbjct 6512 TGGTTGGTTCTTTGCGCC 6495 >seq524375 Length=364 Score = 111 bits (122), Expect = 2e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 188851 TTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 188910 |||||||||||||| ||| ||| | ||||| || || |||||||||| ||||| || Sbjct 196 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 255 Query 188911 ATGATCCCTACGCTTCTCGCTGCAACCATCTGCTTCATCGTCGCCTTTGTCGCTGCACCC 188970 ||||||||||| || | |||||||| | || || | ||||| ||||||| || Sbjct 256 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTTATTATTGCCTTCATCGCTGCTCCT 315 Query 188971 CCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTC 189011 ||||| ||||| ||||| ||||| || || || |||| || Sbjct 316 CCTGTGGACATCGATGGTATCCGTGAGCCTGTTTCTGGCTC 356 >seq862 Length=327473 Score = 109 bits (120), Expect = 7e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 190578 GCAATCCATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACG 190637 || || ||||||| || |||| |||||||| | |||||||||||| ||||| || Sbjct 255155 GCTATTCATGGTGCTACCATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACA 255214 Query 190638 TTTAAAGCATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGT 190697 || | || | || | || |||| ||||| || ||||| |||||||| | ||||| Sbjct 255215 TTCCATGCTATTAACCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCGC 255274 Query 190698 TTCTGGTCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATG 190757 || ||||| ||||||||||| || | || ||||| ||||| |||||||||||| Sbjct 255275 TTTTGGTCCCAAATCTTTGGGATTACTTTTTCCAATAAACATTGGTTACATTTCTTTATG 255334 Query 190758 CTCTTTGT 190765 | ||||| Sbjct 255335 TTTTTTGT 255342 >seq345864 Length=152 Score = 100 bits (110), Expect = 4e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 190431 GGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCAGCGATCTTCCGCTTCCTC 190490 |||||||| ||||||| || || ||| || || || ||||| |||||||| ||| | Sbjct 3 GGTCAATCAGGTTGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCATT 62 Query 190491 CTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCCACATGATGGGTGTTGCA 190550 | || || || || |||||||||||||| || ||||| ||||| ||||||||||| || Sbjct 63 TTGTTTTTCCAAGGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGGCT 122 Query 190551 GGT 190553 ||| Sbjct 123 GGT 125 >seq13424 Length=38927 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 189577 ATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGG 189636 |||||||||||||| ||||| || || ||||| | || |||||||| || || ||| Sbjct 6329 ATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACATTTCTTCCTAGCGGCTTGG 6270 Query 189637 CCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGG 189682 || || || ||||||||||| ||||| | || ||||||| |||| Sbjct 6269 CCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGG 6224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629705521710000