Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq862 178 1e-39 seq4549 136 4e-27 seq524375 129 7e-25 seq345864 129 7e-25 seq7860 120 3e-22 seq13424 91.5 2e-13 seq7807 87.8 2e-12 >seq862 Length=327473 Score = 178 bits (196), Expect = 1e-39 Identities = 163/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 164460 GGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGAT 164519 |||| |||||| || ||||||||||||||||||||| |||| |||||||| ||||||||| Sbjct 255137 GGTGCTGCTCTGCTATGTGCTATTCATGGTGCTACCATAGAAAATACTTTATTTGAAGAT 255196 Query 164520 GGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTCG 164579 ||||| ||||||| ||| | || | | || ||||||| ||||| ||||| || Sbjct 255197 GGTGATGGTGCAAATACATTCCATGCTATTAACCCAACTCAAGTTGAAGAAACTTATTCA 255256 Query 164580 ATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGT 164639 |||||||| | |||||||| ||||| || || ||||| ||| |||| |||||| | | Sbjct 255257 ATGGTCACCACTAACCGCTTTTGGTCCCAAATCTTTGGGATTACTTTTTCCAATAAACAT 255316 Query 164640 TGGTTGCACTTCTTTATGCTCTTTGT 164665 ||||| || ||||||||| | ||||| Sbjct 255317 TGGTTACATTTCTTTATGTTTTTTGT 255342 >seq4549 Length=62305 Score = 136 bits (150), Expect = 4e-27 Identities = 207/294 (70%), Gaps = 3/294 (1%) Strand=Plus/Minus Query 164497 TAGAGAATACTTTGTTTGAAGATGGTGAACAAT---CAAATACTTTCAAGGCATTCGAGC 164553 |||| |||||||| |||||||||| ||| | ||||||| ||| || || | Sbjct 53480 TAGAAAATACTTTATTTGAAGATGATGATGATGGTGCAAATACATTCCGTGCTTTTAACA 53421 Query 164554 CTACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTT 164613 ||||||| || | ||||| || |||||||| || |||| ||| ||||| || || | Sbjct 53420 TAACTCAAGCTAAATAAACTTATTCAATGGTCACCGCTAACCACTTTTGGTCCCAAATCT 53361 Query 164614 TTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCA 164673 ||| ||||||| | |||| ||||||| ||||||||||| | ||||| || | | Sbjct 53360 TTGAGGTTGCTTTTTCCGATAAATGTTGGTTACACTTCTTTATATTATTTGTACCAATAA 53301 Query 164674 TGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATG 164733 || | || | || || |||| || | ||||| | || || || ||||| |||| Sbjct 53300 CTGGTTTATGAATGAGGGCTCTTGGAATAGTTGGTCTACCTCTGAACCTACGTGCCTATG 53241 Query 164734 ATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCT 164787 | || | | ||| || || | |||||| | ||||||||||||||||| |||| Sbjct 53240 ACTTCATTTTTCAAGAAATCCGTGCAGCATAAGATCCTGAATTTGAGACTTTCT 53187 >seq524375 Length=364 Score = 129 bits (142), Expect = 7e-25 Identities = 130/169 (77%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631 |||||||| ||||| || || | || || |||||| |||||||||| ||||| || Sbjct 196 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 255 Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTGCTTTATTACTGCGTTCGTTGCTGCTCCC 160691 |||||||| || || ||| | |||||| | ||||||| ||| ||| | |||||||| Sbjct 256 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTTATTATTGCCTTCATCGCTGCTCCT 315 Query 160692 CCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGT 160740 || ||||||||||| ||||||||||| || ||| |||| || || ||| Sbjct 316 CCTGTGGACATCGATGGTATCCGTGAGCCTGTTTCTGGCTCTTTGCTGT 364 >seq345864 Length=152 Score = 129 bits (142), Expect = 7e-25 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 164331 GGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTC 164390 || ||||| ||||||| ||||| || ||||| || || || |||||| | ||| | Sbjct 3 GGTCAATCAGGTTGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCATT 62 Query 164391 TTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCA 164450 ||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| || Sbjct 63 TTGTTTTTCCAAGGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGGCT 122 Query 164451 GGCATCCTTGGTGGTGCTCTTCTCTGTGC 164479 || | | || | ||||||||| ||||| Sbjct 123 GGTGTATTAGGAGCTGCTCTTCTTTGTGC 151 >seq7860 Length=10955 Score = 120 bits (132), Expect = 3e-22 Identities = 164/228 (72%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 164139 GGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGA 164198 ||||| || | | | ||||| ||| | || || || ||| ||||||| || ||||||| Sbjct 6712 GGGGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGC 6653 Query 164199 TCTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATC 164258 |||| | || || ||||||||| | || || |||||| |||| || ||| | Sbjct 6652 GCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTG 6593 Query 164259 CGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTT 164318 || || || ||||| || || ||||||| ||| |||||||| ||||| || ||| | Sbjct 6592 CGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCTTG 6533 Query 164319 ATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGG 164366 || || || || || || ||| |||||||||||| | ||| |||| || Sbjct 6532 ATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTG-CGCCTAGTTTTGG 6486 >seq13424 Length=38927 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 161296 TGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCAT 161355 ||||||||||||| ||| ||||| || || ||||| || || |||||||| || || | Sbjct 6331 TGATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACATTTCTTCCTAGCGGCTT 6272 Query 161356 GGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGG 161403 ||||||| || |||||||||||||| || | ||| || ||| |||| Sbjct 6271 GGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGG 6224 >seq7807 Length=112412 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/130 (75%), Gaps = 6/130 (5%) Strand=Plus/Minus Query 164424 AACCCCTTCCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGT-----G 164478 ||||| || |||||||||||| |||| || | | || |||||| ||||| | Sbjct 47495 AACCCATTTCATATGATGGGT-TTGCCGGTGTATTGGGCACTGCTCTGCTCTGCCATGCG 47437 Query 164479 CTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTT 164538 ||||||| ||||||||| |||| |||||||| |||||||||||||| ||||||| | Sbjct 47436 CTATTCACGGTGCTACCATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACAT 47377 Query 164539 TCAAGGCATT 164548 || | || || Sbjct 47376 TCCATGCTTT 47367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555469231086000