Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq54449 93.3 2e-13 seq42233 93.3 2e-13 seq10521 93.3 2e-13 >seq54449 Length=5874 Score = 93.3 bits (102), Expect = 2e-13 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 364442 GGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGTCAGCGGTAAAGGGCATA 364501 ||||| | | |||||||||||||||| ||||| || | || || |||| || ||||| Sbjct 196 GGAATAGCGTGAGGGTTGATGATGATATCAGGGACAAGTCCATCGGCGGGGAAAGGCATG 137 Query 364502 TCTTCGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCATAGCGAGAAGCAAACTTG 364561 ||||| || | | ||| ||||||||| ||||| || | | ||||| ||||||||| Sbjct 136 TCTTCTTGACGGTAGGTGATACCAATGGTACCCTTCTGACCGTGACGAGAGGCAAACTTG 77 Query 364562 TCGCCAATGACTGGG 364576 || ||||| ||||| Sbjct 76 TCACCAAT--CTGGG 64 >seq42233 Length=54512 Score = 93.3 bits (102), Expect = 2e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 364424 CCAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCG 364483 || |||||||| || || ||||||| |||| ||||||||||| || || || || || Sbjct 15200 CCGATAGTCATTCGCGAAGGAATGGCATGAGGATTGATGATGATATCTGGTACGATACCT 15259 Query 364484 TCAGCGGTAAAGGGCATATCTTCGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCA 364543 ||||| || || ||||| ||||| | | | ||| ||| || |||||||| || | Sbjct 15260 TCAGCAGTGAAAGGCATGTCTTCTTGTCGGTAGGTGATACCGATTGTTCCCTTCTGACCG 15319 Query 364544 TAGCGAGAAGCAAACTTGTCGCCAAT 364569 | ||||| ||||||||||| || || Sbjct 15320 TGTCGAGAGGCAAACTTGTCTCCGAT 15345 >seq10521 Length=132224 Score = 93.3 bits (102), Expect = 2e-13 Identities = 135/186 (73%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 364384 CAAGGCTCCCACCTTGGAG-GCT-ACAATCT-CCATGAGCTTACCAATAGTCATACGAGA 364440 ||||| | | ||||||||| || ||| || ||| | || || || |||||||| || Sbjct 115884 CAAGGTTGCGACCTTGGAGAGCAGACACTCGACCAAGTGC---CCGATGGTCATACGCGA 115940 Query 364441 GGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGTCAGCGGTAAAGGGCAT 364500 ||||||| | | ||||||||||||||||| || || || ||| ||| || ||||| Sbjct 115941 CGGAATGGCGTGCGGGTTGATGATGATGTCGGGAGTCACACCCTCAATGGTGAAAGGCAT 116000 Query 364501 ATCTTCGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCATAGCGAGAAGCAAACTT 364560 || || | | ||| ||||||||| |||||||| | | |||||||||||||| Sbjct 116001 GTCCTCTTGTCTATATGTGATACCAATGGTACCCTTTTGACCGTGTCGAGAAGCAAACTT 116060 Query 364561 GTCGCC 364566 ||| || Sbjct 116061 GTCACC 116066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1871557593695095