Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq268 361 8e-98 seq456 333 4e-89 seq1817 206 4e-51 seq1328 152 8e-35 >seq268 Length=2618192 Score = 361 bits (400), Expect = 8e-98 Identities = 237/256 (93%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||| |||||| ||||||||||||| || |||||||||||||||||||||||| | Sbjct 1294542 GTACAAAGAACAGGGATGTAGTCAACGCGACCT-GATGACTCGCGCTTACTAGGAATT-C 1294485 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1294484 CTGGTTGAAGACCAACAATTGCAATGATCTATCTCCATCACGATGAAATTTCAAAGATTA 1294425 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||||| | ||||||||||||||||| |||||||||||||||| Sbjct 1294424 CCCGGGCCTGTCGGCCAAGGTGTGA-ACTCGTTGAATACATCAATGTAGCGCGCGTGCGG 1294366 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | Sbjct 1294365 CCCAGAACATCTAAGGGCATCACAAACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACG 1294306 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 1294305 GCCATAGTCCCTCTAA 1294290 >seq456 Length=204126 Score = 333 bits (368), Expect = 4e-89 Identities = 232/256 (91%), Gaps = 6/256 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||| |||||||| |||||||| ||||||||||||||||||| |||| | Sbjct 67684 GTACAAAGGGCAGGGTCGTAGTCATCGCGAGCT-GATGACTCGCGCTTACTAGAAATT-C 67627 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 67626 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTG 67567 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||| |||||||||||||| ||| | ||||||||||||||| |||||||||||||||||| Sbjct 67566 CCC-GACCTGTCGGCCAAAGTG-TGAACTCGTTGAATACATTAGTGTAGCGCGCGTGCGG 67509 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 ||||||||||||| | ||||||||||||||||||||||||||||| ||||||||| | Sbjct 67508 TCCAGAACATCTAA-GATATCACAGACCTGTTATTGCCTCAAACTTCGTTGGCCTAAATG 67450 Query 241 GCCAT-CTCCCTCGAA 255 | || |||||| || Sbjct 67449 ACAATAGTCCCTCTAA 67434 >seq1817 Length=49288 Score = 206 bits (228), Expect = 4e-51 Identities = 121/123 (98%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 36857 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 36914 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 36915 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 36974 Query 121 CCC 123 ||| Sbjct 36975 CCC 36977 >seq1328 Length=1576597 Score = 152 bits (168), Expect = 8e-35 Identities = 100/109 (92%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 148 CTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 207 || ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| Sbjct 1573579 CTGGTTGAATACATCAGTGTAGCGCGCGTGTGGCCCAGAACATCTAACGGCATCACAGAC 1573520 Query 208 CTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255 ||||||||||||||||||||| ||||||||| | |||| |||||| || Sbjct 1573519 CTGTTATTGCCTCAAACTTCCTTGGCCTAAACGTCCATAGTCCCTCTAA 1573471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751985837960