Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05]
1,944 sequences; 188,794,588 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq268 361 8e-98
seq456 333 4e-89
seq1817 206 4e-51
seq1328 152 8e-35
>seq268
Length=2618192
Score = 361 bits (400), Expect = 8e-98
Identities = 237/256 (93%), Gaps = 4/256 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||| |||||| ||||||||||||| || |||||||||||||||||||||||| |
Sbjct 1294542 GTACAAAGAACAGGGATGTAGTCAACGCGACCT-GATGACTCGCGCTTACTAGGAATT-C 1294485
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1294484 CTGGTTGAAGACCAACAATTGCAATGATCTATCTCCATCACGATGAAATTTCAAAGATTA 1294425
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||||| |||||||||||||||| | ||||||||||||||||| ||||||||||||||||
Sbjct 1294424 CCCGGGCCTGTCGGCCAAGGTGTGA-ACTCGTTGAATACATCAATGTAGCGCGCGTGCGG 1294366
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
Sbjct 1294365 CCCAGAACATCTAAGGGCATCACAAACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACG 1294306
Query 241 GCCAT-CTCCCTCGAA 255
||||| |||||| ||
Sbjct 1294305 GCCATAGTCCCTCTAA 1294290
>seq456
Length=204126
Score = 333 bits (368), Expect = 4e-89
Identities = 232/256 (91%), Gaps = 6/256 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||| |||||||| |||||||| ||||||||||||||||||| |||| |
Sbjct 67684 GTACAAAGGGCAGGGTCGTAGTCATCGCGAGCT-GATGACTCGCGCTTACTAGAAATT-C 67627
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67626 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTG 67567
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||| |||||||||||||| ||| | ||||||||||||||| ||||||||||||||||||
Sbjct 67566 CCC-GACCTGTCGGCCAAAGTG-TGAACTCGTTGAATACATTAGTGTAGCGCGCGTGCGG 67509
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240
||||||||||||| | ||||||||||||||||||||||||||||| ||||||||| |
Sbjct 67508 TCCAGAACATCTAA-GATATCACAGACCTGTTATTGCCTCAAACTTCGTTGGCCTAAATG 67450
Query 241 GCCAT-CTCCCTCGAA 255
| || |||||| ||
Sbjct 67449 ACAATAGTCCCTCTAA 67434
>seq1817
Length=49288
Score = 206 bits (228), Expect = 4e-51
Identities = 121/123 (98%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 36857 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 36914
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 36915 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 36974
Query 121 CCC 123
|||
Sbjct 36975 CCC 36977
>seq1328
Length=1576597
Score = 152 bits (168), Expect = 8e-35
Identities = 100/109 (92%), Gaps = 1/109 (1%)
Strand=Plus/Minus
Query 148 CTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 207
|| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1573579 CTGGTTGAATACATCAGTGTAGCGCGCGTGTGGCCCAGAACATCTAACGGCATCACAGAC 1573520
Query 208 CTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255
||||||||||||||||||||| ||||||||| | |||| |||||| ||
Sbjct 1573519 CTGTTATTGCCTCAAACTTCCTTGGCCTAAACGTCCATAGTCCCTCTAA 1573471
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751985837960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |