Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq207 152 1e-34 seq673 80.6 7e-13 >seq207 Length=455821 Score = 152 bits (168), Expect = 1e-34 Identities = 197/272 (72%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 39 CAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCG 98 ||||||||||||||| ||| ||||||||||| |||||| | |||||||||||||| | Sbjct 143683 CAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTG 143624 Query 99 CAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTG 158 ||| || | | |||| | | || ||||||| ||||| |||| ||| || | | Sbjct 143623 TAGGTGGCTTTTTAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAA 143564 Query 159 ACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGT 218 ||| | || |||| | || || | |||||| | ||| ||| ||||||||||| Sbjct 143563 ACTACCAAGCTTGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGT 143504 Query 219 AGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATG 278 ||| || | | ||||||||| |||||| ||| | ||||| |||||||| || | Sbjct 143503 AGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGA 143444 Query 279 CACGAAAGCGTGGGGAGCAAACAGGATTAGAT 310 |||||||| ||||||| || ||||||||| Sbjct 143443 GACGAAAGCTAGGGGAGCGAATGGGATTAGAT 143412 >seq673 Length=587269 Score = 80.6 bits (88), Expect = 7e-13 Identities = 103/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 205 GCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAA 264 ||||||||||||||||| || | | ||||| ||| |||||| ||| ||||| | Sbjct 121125 GCAGTGAAATGCGTAGAGATCGGAAAGAACATCAACGGCGAAAGCATTATGCTGGGCCGA 121066 Query 265 CACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCA 324 |||||| || | | ||||| || |||| || ||| |||||||| | ||| ||| Sbjct 121065 CACTGATACTAAGAGATGAAAGTTAGGAGAGCGAATAGGGTTAGATACTCCAGTAATCCT 121006 Query 325 CGCCCTAAACGATATCAACTAG 346 ||| |||||||||| ||||| Sbjct 121005 AGCCGTAAACGATATATACTAG 120984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289574930176