Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1451 114 2e-23 seq1208 109 8e-22 >seq1451 Length=538076 Score = 114 bits (126), Expect = 2e-23 Identities = 172/243 (71%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| |||||||| ||| || |||||| ||||| | ||| || |||| Sbjct 516862 CCTTCCGGCACTGGGCAGGCATCAACCCCCATACATGATCTTAC-GACTTTGCGAAGACC 516804 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| ||||||||||||| || || |||||||| ||| Sbjct 516803 TGTGTTTTTGGTAAACAGTCGCTCGGGCCTGGTCACTGCGACCC------GCT------- 516757 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || |||||| ||||||||||||||| |||| ||||||| || ||||| Sbjct 516756 TTGTG----AGGAG--GCACCCTTTCTCCCGAAGTTACAGGGCTATTTTGCTGAGTTCCT 516703 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| || | ||| ||||||||||||| |||||||||||||||| | Sbjct 516702 TAGAGAGAGTTGTTTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 516643 Query 246 GTA 248 ||| Sbjct 516642 GTA 516640 >seq1208 Length=4595443 Score = 109 bits (120), Expect = 8e-22 Identities = 174/245 (71%), Gaps = 26/245 (11%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||| ||||||||||||| | |||||| | |||| | ||| || |||| Sbjct 3846463 CCTTCCAGCACTGGGCAGGCGTCAGCCTTCATACATGGTCTTAT-GACTTTGCGGAGACC 3846405 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| || ||||||||| || || |||||||| || Sbjct 3846404 TGTGTTTTTGGTCAACAGTCGCCCAGGCCTGGTCACTGCGACCCCCT------------- 3846358 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||| ||||||||| ||||| |||||||| | ||||| Sbjct 3846357 TTGTG----AGGAG--GCACCCCTTCTACCGAAGTTATGGGGCTATTTTGCCAAGTTCCT 3846304 Query 186 TAACCACAGTTCACCCGAACGCCT-TA-GTATTCTCTACCTGACCACCTGTGTCGGTTTA 243 || | |||| | || ||||| || ||||||||||||| |||| ||||||||||| Sbjct 3846303 TA--GAGAGTTGTCTCG--CGCCTCTAGGTATTCTCTACCTACCCACTTGTGTCGGTTTT 3846248 Query 244 CGGTA 248 |||| Sbjct 3846247 GGGTA 3846243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694386922712