Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05]
1,944 sequences; 188,794,588 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq1451 114 2e-23
seq1208 109 8e-22
>seq1451
Length=538076
Score = 114 bits (126), Expect = 2e-23
Identities = 172/243 (71%), Gaps = 20/243 (8%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| |||||||| ||| || |||||| ||||| | ||| || ||||
Sbjct 516862 CCTTCCGGCACTGGGCAGGCATCAACCCCCATACATGATCTTAC-GACTTTGCGAAGACC 516804
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| ||||||||||||| || || |||||||| |||
Sbjct 516803 TGTGTTTTTGGTAAACAGTCGCTCGGGCCTGGTCACTGCGACCC------GCT------- 516757
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || || |||||| ||||||||||||||| |||| ||||||| || |||||
Sbjct 516756 TTGTG----AGGAG--GCACCCTTTCTCCCGAAGTTACAGGGCTATTTTGCTGAGTTCCT 516703
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
|| | |||| || | ||| ||||||||||||| |||||||||||||||| |
Sbjct 516702 TAGAGAGAGTTGTTTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 516643
Query 246 GTA 248
|||
Sbjct 516642 GTA 516640
>seq1208
Length=4595443
Score = 109 bits (120), Expect = 8e-22
Identities = 174/245 (71%), Gaps = 26/245 (11%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| ||| ||||||||||||| | |||||| | |||| | ||| || ||||
Sbjct 3846463 CCTTCCAGCACTGGGCAGGCGTCAGCCTTCATACATGGTCTTAT-GACTTTGCGGAGACC 3846405
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| || ||||||||| || || |||||||| ||
Sbjct 3846404 TGTGTTTTTGGTCAACAGTCGCCCAGGCCTGGTCACTGCGACCCCCT------------- 3846358
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || || ||||||||||| ||||||||| ||||| |||||||| | |||||
Sbjct 3846357 TTGTG----AGGAG--GCACCCCTTCTACCGAAGTTATGGGGCTATTTTGCCAAGTTCCT 3846304
Query 186 TAACCACAGTTCACCCGAACGCCT-TA-GTATTCTCTACCTGACCACCTGTGTCGGTTTA 243
|| | |||| | || ||||| || ||||||||||||| |||| |||||||||||
Sbjct 3846303 TA--GAGAGTTGTCTCG--CGCCTCTAGGTATTCTCTACCTACCCACTTGTGTCGGTTTT 3846248
Query 244 CGGTA 248
||||
Sbjct 3846247 GGGTA 3846243
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694386922712
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |