Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq1451 87.8 2e-15 seq1208 75.2 1e-11 >seq1451 Length=538076 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| ||||| | |||||||||||||||| ||||||| ||| | || ||| | Sbjct 516701 TAAGGAACTCAGCAAAATAGCCCTGTAACTTCGGGAGAAAGGGTGCCTCCTCACAAA--G 516758 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 || ||||| || ||| || || |||||||| |||||||||||| || Sbjct 516759 CGGGTCGCAGTGACCAGGCCCGAGCGACTGTTTACCAAAAACACAGGTCT 516808 >seq1208 Length=4595443 Score = 75.2 bits (82), Expect = 1e-11 Identities = 83/110 (75%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| ||||||||| | || |||| ||| | || ||| || Sbjct 3846302 TAAGGAACTTGGCAAAATAGCCCCATAACTTCGGTAGAAGGGGTGCCTCCTCACAAAGGG 3846361 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | | ||||| || ||| | ||| |||||| | |||||||||||| || Sbjct 3846362 G--GTCGCAGTGACCAGGCCTGGGCGACTGTTGACCAAAAACACAGGTCT 3846409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531189996176