Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq1451 219 1e-54 seq1208 203 8e-50 >seq1451 Length=538076 Score = 219 bits (242), Expect = 1e-54 Identities = 298/418 (71%), Gaps = 27/418 (6%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || |||||| ||| ||| |||| || ||| |||||| Sbjct 517052 GCATCTTCACAGACATGTCTATTTCATCGAGCCTCTCTCCGAGATAGTGCCCAGATCGTT 516993 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||| ||| |||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 516992 ACGCCTTTCATGCGGGTCGGAACTTACCTGACAAGGAATTTTGCTACCTTAGGACCGTTA 516933 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | |||||||||||| || ||| || |||||||| ||| | | | || | ||| Sbjct 516932 TAGTTACGGCCGCCATTCACCTGGCCTTCGATCGCCGGCTCCTCTGTCATCAGGTCACCA 516873 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||| ||| ||| |||| | ||| || ||| Sbjct 516872 ACTTCCTTGACCTTCCGGCACTGGGCAGGCATCAACCCCCATACATGATCTTACGACTTT 516813 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || || |||||||||| ||||||||||| |||||||| || ||||| | Sbjct 516812 GCGAAGACCTGTGTTTTTGGTAAACAGTCGCTCGGGCCTGGTCACTGCGACC------CG 516759 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | | |||||| ||||||||||||||| | || || Sbjct 516758 CTTTGTGAGGAGG-----CACCCT------------TTCTCCCGAAGTTACAGGGCTATT 516716 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 |||| |||||||| ||||| | || || ||| ||||||||||||| | |||| Sbjct 516715 TTGCTGAGTTCCTTAGAGAGAGTTGTTTCGCGCCCCTAGGTATTCTCTACCTACCCAC 516658 >seq1208 Length=4595443 Score = 203 bits (224), Expect = 8e-50 Identities = 294/418 (70%), Gaps = 29/418 (7%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || | ||||| ||| ||| ||||||| ||| |||||| Sbjct 3846653 GCATCTTCACAGACATGTCTACTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 3846594 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 3846593 ACGCCTTTCGTGCAGGTCAGAACTTACACGACAAGGAATTTCGCTACCTTAGGACCGTTA 3846534 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||| ||| ||| |||||||||| | || || | | | || | ||| Sbjct 3846533 TAGTTACGGTCGCTGTTCACCGGGGCTTTGGTCGCCGTCTCCCCTGTCATCAGGTCACCA 3846474 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || ||||||| |||| |||||||||||| | |||| | ||| | ||| Sbjct 3846473 ACTTCCTTGACCTTCCAGCACTGGGCAGGCGTCAGCCTTCATACATGGTCTTATGACTTT 3846414 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| | ||||||||| |||||||| || ||||| Sbjct 3846413 GCGGAGACCTGTGTTTTTGGTCAACAGTCGCCCAGGCCTGGTCACTGCGACC------CC 3846360 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | ||| | |||||| ||||||||| || || || Sbjct 3846359 CTTTGTGAGGA-----------------GGCACCCCTTCTACCGAAGTTATGGGGCTATT 3846317 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || || ||||||||||||| | |||| Sbjct 3846316 TTGCCAAGTTCCTT--AGAGAGTTGTCTCGCGCCTCTAGGTATTCTCTACCTACCCAC 3846261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260775490048