Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq1208 277 4e-72 seq1451 273 5e-71 >seq1208 Length=4595443 Score = 277 bits (306), Expect = 4e-72 Identities = 278/356 (78%), Gaps = 14/356 (4%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | | ||||||||| || | ||||||||||||| |||||| Sbjct 3846653 GCATCTTCACAGACATGTCTACTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 3846594 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 3846593 ACGCCTTTCGTGCAGGTCAGAACTTACACGACAAGGAATTTCGCTACCTTAGGACCGTTA 3846534 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATC- 185 ||||||||| ||| ||| || ||||||| | || | | || || || | ||| || Sbjct 3846533 TAGTTACGGTCGCTGTTCACCGGGGCTT-TGGTCGCCGTCTCCCCTG-TC-ATCAGGTCA 3846477 Query 186 ------CCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGAC 239 |||| |||||||||||| |||||||||||||| |||||| ||||| ||| Sbjct 3846476 CCAACTTCCTTGACCTTCCAGCACTGGGCAGGCGTCAGCCTTCATACATGGTCTTATGAC 3846417 Query 240 TTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTG 296 || || || ||||||||||||||| ||||||||| ||||| || ||||| ||| Sbjct 3846416 TTTGCGGAGACCTGTGTTTTTGGTCAACAGTCGCCCAGGCCTGGTCACTGCGACCCCCTT 3846357 Query 297 TCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | || ||||||||||||| || |||||| |||| |||||||| ||||||||| Sbjct 3846356 TGTGAG-GAGGCACCCCTTCTACCGAAGTTATGGGGCTATTTTGCCAAGTTCCTTA 3846302 >seq1451 Length=538076 Score = 273 bits (302), Expect = 5e-71 Identities = 276/355 (78%), Gaps = 12/355 (3%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||| |||| || | |||| |||||||| |||||| Sbjct 517052 GCATCTTCACAGACATGTCTATTTCATCGAGCCTCTCTCCGAGATAGTGCCCAGATCGTT 516993 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 516992 ACGCCTTTCATGCGGGTCGGAACTTACCTGACAAGGAATTTTGCTACCTTAGGACCGTTA 516933 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATC- 185 |||||||||||||| || || || ||| | || | | || || || | ||| || Sbjct 516932 TAGTTACGGCCGCCATTCACCTGGCCTT-CGATCGCCGGCTCCTCTG-TC-ATCAGGTCA 516876 Query 186 ------CCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGAC 239 |||| ||||||| |||| |||||||| ||| | || |||||| |||| |||| Sbjct 516875 CCAACTTCCTTGACCTTCCGGCACTGGGCAGGCATCAACCCCCATACATGATCTTACGAC 516816 Query 240 TTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTG--T 297 || || | |||||||||||||||||||||||||| |||||| || ||||| || | | Sbjct 516815 TTTGCGAAGACCTGTGTTTTTGGTAAACAGTCGCTCGGGCCTGGTCACTGCGACCCGCTT 516756 Query 298 CATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | |||||||| ||||||| ||||||| ||| ||||||| |||||||||| Sbjct 516755 TGTGAGGAGGCACCCTTTCTCCCGAAGTTACAGGGCTATTTTGCTGAGTTCCTTA 516701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062379346944