Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05]
1,944 sequences; 188,794,588 total letters
Query= AAMG01000811.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
seq1208 188 2e-45
seq673 91.5 4e-16
seq1071 87.8 5e-15
>seq1208
Length=4595443
Score = 188 bits (208), Expect = 2e-45
Identities = 164/201 (82%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 15 TGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGA 74
|||||| |||||||||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct 3845627 TGAAACCCAAAGGAATTTACGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTCGA 3845568
Query 75 AGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTT 134
|||| |||||||||||||||| |||||||| | || |||| || |||||||
Sbjct 3845567 TGCAAAGCGAAGAACCTTACCAGGGCTTGACATACCGCGAATGCTCTTGAAATAGAGGGG 3845508
Query 135 TCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGA 194
| ||||| || || | ||||||| | ||||| ||||||||||||||| ||| ||
Sbjct 3845507 T-GCCTTC-AGGAACGCGGACACAGGTGGTACATGGCTGTCGTCAGCTCGTGCCGTAAGG 3845450
Query 195 TGTTGGGTTAAGTCCCGCAAC 215
|||||||||||||| ||||||
Sbjct 3845449 TGTTGGGTTAAGTCTCGCAAC 3845429
>seq673
Length=587269
Score = 91.5 bits (100), Expect = 4e-16
Identities = 76/93 (82%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| ||||| ||||| ||||||||||| |||||||| |||| || |||
Sbjct 120921 TACGTTCGCAAGAATGAAATTCAAAAAAATTGACGGGGTTCCGCACAAACGGTAGACCAT 120862
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTA 93
|| ||||||||||| |||| || || |||||||
Sbjct 120861 GTAGTTTAATTCGATGCAAAGCAAAAAACCTTA 120829
>seq1071
Length=2817113
Score = 87.8 bits (96), Expect = 5e-15
Identities = 76/93 (82%), Gaps = 1/93 (1%)
Strand=Plus/Plus
Query 404 GTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATC 463
|| |||||||||||||| || |||||||||| || ||||||| ||||||||||||||||
Sbjct 629669 GTCCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATC 629728
Query 464 GTAGATC-AGCATGCTACGGTGAATACGTTCCC 495
| | || | ||| | | |||||| |||||||
Sbjct 629729 GCCGGTCAACCATACGGCAGTGAATTCGTTCCC 629761
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1503970762240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |