Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq1208 188 2e-45 seq673 91.5 4e-16 seq1071 87.8 5e-15 >seq1208 Length=4595443 Score = 188 bits (208), Expect = 2e-45 Identities = 164/201 (82%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 15 TGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGA 74 |||||| |||||||||| |||||| || |||||||||||||||||||||||||||||||| Sbjct 3845627 TGAAACCCAAAGGAATTTACGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTCGA 3845568 Query 75 AGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTT 134 |||| |||||||||||||||| |||||||| | || |||| || ||||||| Sbjct 3845567 TGCAAAGCGAAGAACCTTACCAGGGCTTGACATACCGCGAATGCTCTTGAAATAGAGGGG 3845508 Query 135 TCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGA 194 | ||||| || || | ||||||| | ||||| ||||||||||||||| ||| || Sbjct 3845507 T-GCCTTC-AGGAACGCGGACACAGGTGGTACATGGCTGTCGTCAGCTCGTGCCGTAAGG 3845450 Query 195 TGTTGGGTTAAGTCCCGCAAC 215 |||||||||||||| |||||| Sbjct 3845449 TGTTGGGTTAAGTCTCGCAAC 3845429 >seq673 Length=587269 Score = 91.5 bits (100), Expect = 4e-16 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||| ||||| ||||||||||| |||||||| |||| || ||| Sbjct 120921 TACGTTCGCAAGAATGAAATTCAAAAAAATTGACGGGGTTCCGCACAAACGGTAGACCAT 120862 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTA 93 || ||||||||||| |||| || || ||||||| Sbjct 120861 GTAGTTTAATTCGATGCAAAGCAAAAAACCTTA 120829 >seq1071 Length=2817113 Score = 87.8 bits (96), Expect = 5e-15 Identities = 76/93 (82%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 404 GTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATC 463 || |||||||||||||| || |||||||||| || ||||||| |||||||||||||||| Sbjct 629669 GTCCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATC 629728 Query 464 GTAGATC-AGCATGCTACGGTGAATACGTTCCC 495 | | || | ||| | | |||||| ||||||| Sbjct 629729 GCCGGTCAACCATACGGCAGTGAATTCGTTCCC 629761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503970762240