Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq268 273 3e-71 seq456 228 1e-57 seq1328 141 1e-31 >seq268 Length=2618192 Score = 273 bits (302), Expect = 3e-71 Identities = 217/259 (84%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 1294399 ACTCGTTGAATACATCAATGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAAA 1294340 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || | | | ||||||||||||||||||| | Sbjct 1294339 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGAAC 1294280 Query 122 ACCAACCATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || | || | | |||| |||||||| | ||||||||||||| | ||||| Sbjct 1294279 GTGAAGGGATGCTTCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTCA---GAATT 1294223 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1294222 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 1294163 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 1294162 AAAGAGCTCTCAGTCTGTC 1294144 >seq456 Length=204126 Score = 228 bits (252), Expect = 1e-57 Identities = 203/252 (81%), Gaps = 3/252 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | | |||||||||||||||||| |||||||||||||| |||||||| Sbjct 67542 ACTCGTTGAATACATTAGTGTAGCGCGCGTGCGGTCCAGAACATCTAAGAT-ATCACAGA 67484 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||||||||||||||||||||| | | || | | ||||||||||||||||||| | | | Sbjct 67483 CCTGTTATTGCCTCAAACTTCGTTGGCCTAAATGACAATAGTCCCTCTAAGAAGTCGGGC 67424 Query 122 ACCAACCATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || | || | | |||| |||||||| | |||| || | ||||| ||||||| Sbjct 67423 GTGAAGGGATGCCTCCACGTAGCTAGTTAGCAGGCTGAGGTATCATACGTTAACGGAATT 67364 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||| ||||||| | ||||||| |||||||| ||||| ||||||||||||||||||||| Sbjct 67363 AACCAAACAAATCGCCCCACCAATTAAGAACGACCATGTACCACCACCCATAGAATCAAG 67304 Query 240 AAAGAGCTATCA 251 |||||||| ||| Sbjct 67303 AAAGAGCTCTCA 67292 >seq1328 Length=1576597 Score = 141 bits (156), Expect = 1e-31 Identities = 95/106 (90%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| Sbjct 1573566 TCAGTGTAGCGCGCGTGTGGCCCAGAACATCTAACGGCATCACAGACCTGTTATTGCCTC 1573507 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||| | | || | | | ||||||||||||||||||| ||| Sbjct 1573506 AAACTTCCTTGGCCTAAACGTCCATAGTCCCTCTAAGAAGCCGGCC 1573461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796784994264