Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05]
1,944 sequences; 188,794,588 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq268 273 3e-71
seq456 228 1e-57
seq1328 141 1e-31
>seq268
Length=2618192
Score = 273 bits (302), Expect = 3e-71
Identities = 217/259 (84%), Gaps = 5/259 (2%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1294399 ACTCGTTGAATACATCAATGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAAA 1294340
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
|||||||||||||||||||||| | | || | | | ||||||||||||||||||| |
Sbjct 1294339 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGAAC 1294280
Query 122 ACCAACCATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
|| | || | | |||| |||||||| | ||||||||||||| | |||||
Sbjct 1294279 GTGAAGGGATGCTTCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTCA---GAATT 1294223
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294222 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 1294163
Query 240 AAAGAGCTATCAATCTGTC 258
|||||||| ||| ||||||
Sbjct 1294162 AAAGAGCTCTCAGTCTGTC 1294144
>seq456
Length=204126
Score = 228 bits (252), Expect = 1e-57
Identities = 203/252 (81%), Gaps = 3/252 (1%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | | |||||||||||||||||| |||||||||||||| ||||||||
Sbjct 67542 ACTCGTTGAATACATTAGTGTAGCGCGCGTGCGGTCCAGAACATCTAAGAT-ATCACAGA 67484
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
||||||||||||||||||||| | | || | | ||||||||||||||||||| | | |
Sbjct 67483 CCTGTTATTGCCTCAAACTTCGTTGGCCTAAATGACAATAGTCCCTCTAAGAAGTCGGGC 67424
Query 122 ACCAACCATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
|| | || | | |||| |||||||| | |||| || | ||||| |||||||
Sbjct 67423 GTGAAGGGATGCCTCCACGTAGCTAGTTAGCAGGCTGAGGTATCATACGTTAACGGAATT 67364
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
||||| ||||||| | ||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 67363 AACCAAACAAATCGCCCCACCAATTAAGAACGACCATGTACCACCACCCATAGAATCAAG 67304
Query 240 AAAGAGCTATCA 251
|||||||| |||
Sbjct 67303 AAAGAGCTCTCA 67292
>seq1328
Length=1576597
Score = 141 bits (156), Expect = 1e-31
Identities = 95/106 (90%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1573566 TCAGTGTAGCGCGCGTGTGGCCCAGAACATCTAACGGCATCACAGACCTGTTATTGCCTC 1573507
Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
|||||||| | | || | | | ||||||||||||||||||| |||
Sbjct 1573506 AAACTTCCTTGGCCTAAACGTCCATAGTCCCTCTAAGAAGCCGGCC 1573461
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796784994264
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |