Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1394 408 7e-112 seq1366 376 4e-102 seq1328 358 1e-96 seq1470 338 1e-90 seq1639 104 4e-20 >seq1394 Length=2969664 Score = 408 bits (452), Expect = 7e-112 Identities = 267/293 (91%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | |||| ||| ||||||||||||||||||||||||||||| Sbjct 2762326 TACTAGGTTGAATTACTATCGTGGCG-CGGGCATCAGTAGGGTAAAACTAACCTGTCTCA 2762268 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 2762267 TGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 2762208 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2762207 ATTCTGCTTCACAATGGTAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 2762148 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| | Sbjct 2762147 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAAATTTTCTGACACCTCTAGCTT 2762088 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||||||| || |||||||||||||||||||| ||||| |||| |||||| Sbjct 2762087 CAAATTTCGAAGGTCTAAAGGATCGATAGGCCACGTTTTCACGGTTCGTATTC 2762035 >seq1366 Length=583463 Score = 376 bits (416), Expect = 4e-102 Identities = 260/293 (89%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | | || ||| ||||||||||||||||||||||||||||| Sbjct 401610 TACTAGGTTGAATTACTATCGCGACG-CGGGCATCAGTAGGGTAAAACTAACCTGTCTCA 401668 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 401669 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 401728 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||| |||||||| || ||||||||||||||||||| Sbjct 401729 ATTCTGCTTCACAATGATAGGAAGAGCCAACATCGAAAGACCAAAAAGCAACGTCGCTAT 401788 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||| | Sbjct 401789 GAACGCTTGGTTGCCACAAGCTAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 401848 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| ||| || | ||||||||||||||||| |||||| |||| |||||| Sbjct 401849 CAAATTCCGAAGGTCCTAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 401901 >seq1328 Length=1576597 Score = 358 bits (396), Expect = 1e-96 Identities = 256/293 (87%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | | || || |||||||||||||||||||| ||||||| Sbjct 1550317 TACTAGGTTGAATTACTATCGCGACGTGGG-CATCAGTAGGGTAAAACTAATTTGTCTCA 1550375 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 || |||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 1550376 CGATGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 1550435 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| |||||||||||||||||||||||||||| | |||||||||| ||||| Sbjct 1550436 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATTAGAAAGCAACGTTGCTAT 1550495 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| | Sbjct 1550496 GAACGCTTGGCTGCCACAAGCCAGTTATCCATGTGGTAACTTTTCTGACACCTCTAGCTT 1550555 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| | | | |||||||||||||||||||| |||||| |||| ||||| Sbjct 1550556 CAAATTCCAAAAGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCATATTC 1550608 >seq1470 Length=2917085 Score = 338 bits (374), Expect = 1e-90 Identities = 232/262 (89%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||| ||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| Sbjct 2348488 CATTAGTAGGGTAAAACTAACCTATCTCACAACGGTCTAAACCCAGCTCAAGTTCCCTAT 2348547 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 | |||||||||||||||||| ||| |||||||||||| |||||||||||||||||| Sbjct 2348548 TGGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGAC 2348607 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2348608 ATCTAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCTAGTTATCCC 2348667 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 ||||||||||||| || ||||||||| ||||||| | | || |||||||||||||| || Sbjct 2348668 TGTGGTAACTTTTTTGACACCTCTAGTTTCAAATTCCAAAGGTCTAAAGGATCGATAAGC 2348727 Query 272 CACACTTTCATGGTTTGTATTC 293 ||| | |||| || |||||| Sbjct 2348728 CACGCCTTCACCTTTCGTATTC 2348749 >seq1639 Length=5101707 Score = 104 bits (114), Expect = 4e-20 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 97 GGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA 156 ||||||||||||||| || |||||||| ||| ||||||||||||||||||||||| Sbjct 1963512 GGTGAACAATCCAACATTTGGTGAATTCTGTTTCACAATGATAGGAAGAGCCGACATCGA 1963453 Query 157 AGGATCAAAAAGCAACGTCGCTATGAA 183 |||| ||||| ||||||||||||||| Sbjct 1963452 AGGAGAAAAAAACAACGTCGCTATGAA 1963426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854383390464