Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq1208 96.9 4e-18 seq1451 84.2 2e-14 >seq1208 Length=4595443 Score = 96.9 bits (106), Expect = 4e-18 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 26 GGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGC 85 ||||||| |||| || |||| || |||||||||| || | | | ||||| |||| Sbjct 3846681 GGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTACTTCACCGAGC 3846622 Query 86 TCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | | | ||||||| ||| || |||||||||||| |||||||| ||| Sbjct 3846621 -CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCAGGTCAGAACTTACACGA 3846563 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||| Sbjct 3846562 CAAGGAATTTCGCTACCTTAGGACCGTTA 3846534 >seq1451 Length=538076 Score = 84.2 bits (92), Expect = 2e-14 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||| ||| |||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 516993 TACGCCTTTCATGCGGGTCGGAACTTACCTGACAAGGAATTTTGCTACCTTAGGACCGTT 516934 Query 173 A 173 | Sbjct 516933 A 516933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547189694856