Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05]
1,944 sequences; 188,794,588 total letters
Query= AAMG01001138.1
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
seq1208 96.9 4e-18
seq1451 84.2 2e-14
>seq1208
Length=4595443
Score = 96.9 bits (106), Expect = 4e-18
Identities = 110/149 (74%), Gaps = 2/149 (1%)
Strand=Plus/Minus
Query 26 GGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGC 85
||||||| |||| || |||| || |||||||||| || | | | ||||| ||||
Sbjct 3846681 GGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTACTTCACCGAGC 3846622
Query 86 TCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144
| | | ||||||| ||| || |||||||||||| |||||||| |||
Sbjct 3846621 -CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCAGGTCAGAACTTACACGA 3846563
Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||||||
Sbjct 3846562 CAAGGAATTTCGCTACCTTAGGACCGTTA 3846534
>seq1451
Length=538076
Score = 84.2 bits (92), Expect = 2e-14
Identities = 55/61 (90%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
||| || ||| ||| |||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 516993 TACGCCTTTCATGCGGGTCGGAACTTACCTGACAAGGAATTTTGCTACCTTAGGACCGTT 516934
Query 173 A 173
|
Sbjct 516933 A 516933
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547189694856
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |