Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05]
1,944 sequences; 188,794,588 total letters
Query= AAMG01001213.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
seq1752 246 1e-62
seq1451 223 1e-55
seq1208 136 1e-29
>seq1752
Length=3388531
Score = 246 bits (272), Expect = 1e-62
Identities = 341/470 (73%), Gaps = 27/470 (6%)
Strand=Plus/Minus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
|||| ||| || |||||||||||| ||||||||| | | ||| || |||| ||||||
Sbjct 473571 GCTGTGCCTCAACGCATTTCGGGGAAAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 473512
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| ||||| |||||| || | |||||||| | ||| ||||||| ||||||| ||
Sbjct 473511 CCCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 473452
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314
| |||| | |||| |||| ||| |||||||||| | ||||||| | | | | |||
Sbjct 473451 TTCACCCAAGTTTCATCCTGGTCATAGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 473392
Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370
|| | ||||||| |||||||||||||||||||| || || ||||
Sbjct 473391 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 473339
Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429
|| || ||| | | | |||| |||||||||||||| |||||||| |||| |
Sbjct 473338 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA----GA 473285
Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489
|| | ||| | |||| || | ||| || | ||||||| || |||||||||
Sbjct 473284 GCC--CAGGGCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 473232
Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549
|||||| ||||| ||||||||| ||||||||||||||| | ||||||||||||| |
Sbjct 473231 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTTGCTATCGGTCACCTA 473172
Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
||||||||||| ||| |||||||| | |||||||||| ||| ||
Sbjct 473171 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 473122
>seq1451
Length=538076
Score = 223 bits (246), Expect = 1e-55
Identities = 336/470 (71%), Gaps = 27/470 (6%)
Strand=Plus/Minus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || |||||||||||||||||||||| | ||| || |||| ||||||
Sbjct 515850 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTGTGGGTTCGAGTGGCATTTCAC 515791
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| ||||| ||||| || | |||||||| | ||| ||||| | |||||| ||
Sbjct 515790 CCCTAACCACAACACATCCGCTGATTTTTCAACATCAGTCGGTTCAGATCTCCACTTAGT 515731
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314
| |||| |||||| |||| ||| |||||||||| | | ||||||| | | | | |||
Sbjct 515730 TTCACCCAAGCTTCATCCTGGTCATAGATAGATCACCTAGGTTCGGGTCCATAAGCAGTG 515671
Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370
|| | ||||||| ||||||||||||||||| || || || ||||
Sbjct 515670 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACG---ACTCCGGTGGGTTCCCTTAA 515618
Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429
|| || ||| | | | |||| ||||||||| |||| |||||||| || | |
Sbjct 515617 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCCTCAACAGGCACGCGGT----TAGA 515564
Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489
|| | ||| | |||| || | || || | |||| || || |||||||||
Sbjct 515563 GCC--CAGGGCTC-----CTCCCACTGCTTAGGAGCTTACGGTTCCATGTTCTATTTCAC 515511
Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549
|||||| | ||| ||||||||| |||||||||||||||| | |||||||| ||||| |
Sbjct 515510 TCCCCGATGGAGGTTCTTTTCACCCTTCCCTCACGGTACTTCTTCGCTATCGATCACCCA 515451
Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
|||||||||| |||| |||||||| | |||||||||| ||| ||
Sbjct 515450 TGAGTATTTAGCCTTACAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 515401
>seq1208
Length=4595443
Score = 136 bits (150), Expect = 1e-29
Identities = 159/212 (75%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 143 CCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTAT 202
||| || ||||||||||||||||||||| | | ||| || ||| ||||||| |||
Sbjct 3844416 CCTCAACACATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGTATTTCACCGCTAA 3844357
Query 203 CCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACC 262
||||| |||||| || | |||||||| | ||| ||||||| ||||||| || | |||
Sbjct 3844356 CCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGTTTCACC 3844297
Query 263 CGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTGCCACTC 320
| |||||| |||| ||| |||||||||| ||| ||||| | | | | | ||| || |
Sbjct 3844296 CAAGCTTCATCCTGGTCATAGATAGATCACCTCGGTTCGGATCCATAAGCAGTGACAAT- 3844238
Query 321 ATACGCCCTATTCGGACTCGCTTTCGCTACGG 352
|||||| ||||||||||||||||||
Sbjct 3844237 ---TTCCCTATGAAGACTCGCTTTCGCTACGG 3844209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1817564665856
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |