Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1752 246 1e-62 seq1451 223 1e-55 seq1208 136 1e-29 >seq1752 Length=3388531 Score = 246 bits (272), Expect = 1e-62 Identities = 341/470 (73%), Gaps = 27/470 (6%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 |||| ||| || |||||||||||| ||||||||| | | ||| || |||| |||||| Sbjct 473571 GCTGTGCCTCAACGCATTTCGGGGAAAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 473512 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | |||||||| | ||| ||||||| ||||||| || Sbjct 473511 CCCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 473452 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| | |||| |||| ||| |||||||||| | ||||||| | | | | ||| Sbjct 473451 TTCACCCAAGTTTCATCCTGGTCATAGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 473392 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||||| |||||||||||||||||||| || || |||| Sbjct 473391 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 473339 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 473338 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA----GA 473285 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 || | ||| | |||| || | ||| || | ||||||| || ||||||||| Sbjct 473284 GCC--CAGGGCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 473232 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | ||||||||||||| | Sbjct 473231 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTTGCTATCGGTCACCTA 473172 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 473171 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 473122 >seq1451 Length=538076 Score = 223 bits (246), Expect = 1e-55 Identities = 336/470 (71%), Gaps = 27/470 (6%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | ||| || |||| |||||| Sbjct 515850 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTGTGGGTTCGAGTGGCATTTCAC 515791 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| ||||| || | |||||||| | ||| ||||| | |||||| || Sbjct 515790 CCCTAACCACAACACATCCGCTGATTTTTCAACATCAGTCGGTTCAGATCTCCACTTAGT 515731 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| ||| |||||||||| | | ||||||| | | | | ||| Sbjct 515730 TTCACCCAAGCTTCATCCTGGTCATAGATAGATCACCTAGGTTCGGGTCCATAAGCAGTG 515671 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||||| ||||||||||||||||| || || || |||| Sbjct 515670 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACG---ACTCCGGTGGGTTCCCTTAA 515618 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| ||||||||| |||| |||||||| || | | Sbjct 515617 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCCTCAACAGGCACGCGGT----TAGA 515564 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 || | ||| | |||| || | || || | |||| || || ||||||||| Sbjct 515563 GCC--CAGGGCTC-----CTCCCACTGCTTAGGAGCTTACGGTTCCATGTTCTATTTCAC 515511 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| | ||| ||||||||| |||||||||||||||| | |||||||| ||||| | Sbjct 515510 TCCCCGATGGAGGTTCTTTTCACCCTTCCCTCACGGTACTTCTTCGCTATCGATCACCCA 515451 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||||||||| |||| |||||||| | |||||||||| ||| || Sbjct 515450 TGAGTATTTAGCCTTACAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 515401 >seq1208 Length=4595443 Score = 136 bits (150), Expect = 1e-29 Identities = 159/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 143 CCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTAT 202 ||| || ||||||||||||||||||||| | | ||| || ||| ||||||| ||| Sbjct 3844416 CCTCAACACATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGTATTTCACCGCTAA 3844357 Query 203 CCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACC 262 ||||| |||||| || | |||||||| | ||| ||||||| ||||||| || | ||| Sbjct 3844356 CCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGTTTCACC 3844297 Query 263 CGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTGCCACTC 320 | |||||| |||| ||| |||||||||| ||| ||||| | | | | | ||| || | Sbjct 3844296 CAAGCTTCATCCTGGTCATAGATAGATCACCTCGGTTCGGATCCATAAGCAGTGACAAT- 3844238 Query 321 ATACGCCCTATTCGGACTCGCTTTCGCTACGG 352 |||||| |||||||||||||||||| Sbjct 3844237 ---TTCCCTATGAAGACTCGCTTTCGCTACGG 3844209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817564665856