Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq1752 217 4e-54 seq1451 167 6e-39 seq1208 77.0 8e-12 >seq1752 Length=3388531 Score = 217 bits (240), Expect = 4e-54 Identities = 308/415 (74%), Gaps = 16/415 (4%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | ||||||||| ||||||||||| |||||| ||||| | Sbjct 473505 CCACAACTCAT-CCGCTGA-TTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 473449 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||||| |||| ||||| ||||||| ||| | || |||||| || | || Sbjct 473448 ACCCAAG-TTTCATCCTGGTCATAG-ATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 473393 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 473392 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 473335 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | | || Sbjct 473334 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCAGG 473278 Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305 | | |||||||||||| || |||||||||| | ||||||||||||||| | |||| Sbjct 473277 GCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGG 473219 Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 |||||||| || |||||||||||||||| || |||||||||| || ||||||||||| Sbjct 473218 TTCTTTTCACCCTTCCCTCACGGTACTACTTTGCTATCGGTCACCTAGGAGTATTTAGCC 473159 Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||| | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 473158 TTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 473104 >seq1451 Length=538076 Score = 167 bits (184), Expect = 6e-39 Identities = 290/404 (72%), Gaps = 16/404 (4%) Strand=Plus/Minus Query 20 TCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTT 79 |||||| | ||||||||| ||||||||| | ||||| ||||| | |||||| ||| Sbjct 515774 TCCGCTGA-TTTTTCAACATCAGTCGGTTCAGATCTCCACTTAGTT-TCACCCAAGCTT- 515718 Query 80 CAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCC 139 || |||| ||||| ||||||| || | || |||||| || | || ||| | ||| Sbjct 515717 CATCCTGGTCATAG-ATAGATCACCTAGGTT-CGGGTCCATAAGC-AGTGACAATT-GCC 515662 Query 140 CTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAA 197 ||| |||||||||||| ||||||| |||| | ||| |||| | ||||||| Sbjct 515661 CTATGAAGACTCGCTTT-CGCTACGACTCCGGTGGGTTCCCTTAACCAA-GCCACTGCCT 515604 Query 198 ATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGC-TCCCAC 256 || |||||| | | |||| ||| ||| |||| || | | | || | | |||||| Sbjct 515603 ATGAGTCGCCGGCTCATTCCTCAACAGGCACGCGGTTAG--AGCCCAGGGCTCCTCCCAC 515546 Query 257 TGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCC 316 ||||| || ||||||| || | ||||||||||||||| | | |||||||||| || Sbjct 515545 TGCTTAGGAGCTTACGGTTCCATGTTCTATTTCACTCCCCGATG-GAGGTTCTTTTCACC 515487 Query 317 TTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGG 376 ||||||||||||||| ||| |||||| ||| || ||||||||||||| | | ||| Sbjct 515486 CTTCCCTCACGGTACTTCTTCGCTATCGATCACCCATGAGTATTTAGCCTTACAAGGTGG 515427 Query 377 TCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||| | ||||| || || | ||||| || | ||||||| Sbjct 515426 TCCTTGCTGATTCACACGGGATTCCACGTGC-CCATGCTACTCG 515384 >seq1208 Length=4595443 Score = 77.0 bits (84), Expect = 8e-12 Identities = 119/157 (76%), Gaps = 11/157 (7%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | ||||||||| ||||||||||| |||||| ||||| | Sbjct 3844356 CCACAACTCAT-CCGCTGA-TTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT-TTC 3844300 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCC-CGGTTTTCGGGTCTATTTCCCAG 127 |||||| | |||| |||| |||| |||||||| || ||| ||||| || | | ||| Sbjct 3844299 ACCCAAGC-TTCATCCTGGTCATA-GATAGATCACCTCGG--TTCGGATCCA-TAAGCAG 3844245 Query 128 CGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACG 164 ||| | ||||| ||||||||| |||||||||| Sbjct 3844244 TGAC-AATTTCCCTATGAAGACTCGC-TTTCGCTACG 3844210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241575863296