Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq1451 185 2e-44 seq1208 179 9e-43 >seq1451 Length=538076 Score = 185 bits (204), Expect = 2e-44 Identities = 295/410 (72%), Gaps = 20/410 (5%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||| | ||||||||| | || ||| | Sbjct 516400 CGACTACGCCTTTCGGCCTGATTTTAGACGCTGACTCACCCTCCGTGGATGAACCTTGTG 516341 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACAC-GCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | | |||||| ||| Sbjct 516340 GAGGAACCCTTCGGTTTTCGGGGCATTGGATTCTCACCAATATTTGTGTTACTCAAGCCG 516281 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| ||| |||||| || | ||| ||||| || || || | Sbjct 516280 ACATTCTCGCTTCCGCTTCA--TCCACCGGGGC-TCGCGCGGTTGCTTCCCC-CTAACGC 516225 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| || ||| Sbjct 516224 GGAACGCTCCCCTACCGATGCATTTTGACA---TCCCACAGCTTCGGCAGATCGCT-AAG 516169 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | || ||||||| | | || || ||||||||||||||||||||| ||||| Sbjct 516168 CCCCGTTT-ATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTCTCAAG 516110 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCC-ACATCCTTTCCCACT 350 | |||||||||| | || |||||||||| ||||| ||| |||| || |||||| |||| Sbjct 516109 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCA-CTCCTACCTCCTTTATCACT 516051 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||| || ||||| |||||||||| ||||| ||||||||||||||||| Sbjct 516050 GAGCGGTCATTTAGGAGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 516001 >seq1208 Length=4595443 Score = 179 bits (198), Expect = 9e-43 Identities = 290/406 (71%), Gaps = 12/406 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||| || ||||||| |||||| || | ||||||| | ||| ||| | Sbjct 3844972 CGACTACGTCTTTCGGCCTGATCTTAGGCCCTGTCTCACCCTCCGTGGACGAACCATGCG 3844913 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 | | || |||| | |||| | | |||||| |||| | || |||||| ||| Sbjct 3844912 GAGTACCCTTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 3844853 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || |||||| | | |||| ||| ||||| || || | Sbjct 3844852 ACATTCTCGCTTCCGCTTCG--TCCACCGC-CGCTCACGCGGTTGCTTCCCC-CTAAAGT 3844797 Query 178 G--ACGCTCCCCTACCCAACCACACAGG-TTGCCACAGCTTCGGCGGATAACTTAAGCCC 234 | ||||||||||||| | || | || ||||||||||||| ||| |||| |||| Sbjct 3844796 GGAACGCTCCCCTACCGATGCATTTTGACTTCCCACAGCTTCGGCAGATCGCTTA-GCCC 3844738 Query 235 CGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGAT 294 | | ||| ||||||| | | ||||| ||||||||||||||||||||||||| | | Sbjct 3844737 CATT-CATCTTCGGCGCAAGAGCTCTTGATTAGTGAGCTATTACGCACTCTTTCAAAGGT 3844679 Query 295 GGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGT 354 || |||||| | || |||||||||| ||||| ||| | || |||||| ||||||| Sbjct 3844678 GGTTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCTTACCTCCTTTATCACTGAGC 3844619 Query 355 CACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || ||||||||||||||| ||||| ||||||||| ||||||| Sbjct 3844618 GGTCATTTAGGGGCCTTAGCTAGTGATCCGGGCTGTTTTCCTCTCG 3844573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177577107456