Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05]
1,944 sequences; 188,794,588 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq1451 185 2e-44
seq1208 179 9e-43
>seq1451
Length=538076
Score = 185 bits (204), Expect = 2e-44
Identities = 295/410 (72%), Gaps = 20/410 (5%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||||| |||| | ||||||||| | || ||| |
Sbjct 516400 CGACTACGCCTTTCGGCCTGATTTTAGACGCTGACTCACCCTCCGTGGATGAACCTTGTG 516341
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACAC-GCTACTCATGCCT 119
||||||||| | | |||| | | |||||| |||| | | |||||| |||
Sbjct 516340 GAGGAACCCTTCGGTTTTCGGGGCATTGGATTCTCACCAATATTTGTGTTACTCAAGCCG 516281
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177
||||||| || ||| ||| |||||| || | ||| ||||| || || || |
Sbjct 516280 ACATTCTCGCTTCCGCTTCA--TCCACCGGGGC-TCGCGCGGTTGCTTCCCC-CTAACGC 516225
Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231
| ||||||||||||| | || ||| | ||||||||||||| ||| || |||
Sbjct 516224 GGAACGCTCCCCTACCGATGCATTTTGACA---TCCCACAGCTTCGGCAGATCGCT-AAG 516169
Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291
||||| | || ||||||| | | || || ||||||||||||||||||||| |||||
Sbjct 516168 CCCCGTTT-ATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTCTCAAG 516110
Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCC-ACATCCTTTCCCACT 350
| |||||||||| | || |||||||||| ||||| ||| |||| || |||||| ||||
Sbjct 516109 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCA-CTCCTACCTCCTTTATCACT 516051
Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
||| || ||||| |||||||||| ||||| |||||||||||||||||
Sbjct 516050 GAGCGGTCATTTAGGAGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 516001
>seq1208
Length=4595443
Score = 179 bits (198), Expect = 9e-43
Identities = 290/406 (71%), Gaps = 12/406 (3%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
|||||||| || ||||||| |||||| || | ||||||| | ||| ||| |
Sbjct 3844972 CGACTACGTCTTTCGGCCTGATCTTAGGCCCTGTCTCACCCTCCGTGGACGAACCATGCG 3844913
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
| | || |||| | |||| | | |||||| |||| | || |||||| |||
Sbjct 3844912 GAGTACCCTTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 3844853
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177
||||||| || ||| || |||||| | | |||| ||| ||||| || || |
Sbjct 3844852 ACATTCTCGCTTCCGCTTCG--TCCACCGC-CGCTCACGCGGTTGCTTCCCC-CTAAAGT 3844797
Query 178 G--ACGCTCCCCTACCCAACCACACAGG-TTGCCACAGCTTCGGCGGATAACTTAAGCCC 234
| ||||||||||||| | || | || ||||||||||||| ||| |||| ||||
Sbjct 3844796 GGAACGCTCCCCTACCGATGCATTTTGACTTCCCACAGCTTCGGCAGATCGCTTA-GCCC 3844738
Query 235 CGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGAT 294
| | ||| ||||||| | | ||||| ||||||||||||||||||||||||| | |
Sbjct 3844737 CATT-CATCTTCGGCGCAAGAGCTCTTGATTAGTGAGCTATTACGCACTCTTTCAAAGGT 3844679
Query 295 GGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGT 354
|| |||||| | || |||||||||| ||||| ||| | || |||||| |||||||
Sbjct 3844678 GGTTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCTTACCTCCTTTATCACTGAGC 3844619
Query 355 CACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
|| ||||||||||||||| ||||| ||||||||| |||||||
Sbjct 3844618 GGTCATTTAGGGGCCTTAGCTAGTGATCCGGGCTGTTTTCCTCTCG 3844573
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177577107456
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |