Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq268 280 3e-73 seq456 260 3e-67 seq1817 152 1e-34 seq1328 141 2e-31 >seq268 Length=2618192 Score = 280 bits (310), Expect = 3e-73 Identities = 221/261 (85%), Gaps = 3/261 (1%) Strand=Plus/Plus Query 69 CGGCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127 |||||||||||||||||||| | | | || | | ||||||||||||||||||||||| | Sbjct 1294283 CGGCTTCTTAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTTT 1294342 Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCA 187 ||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||| Sbjct 1294343 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACATTGATGTATTCAACGAGTTCA 1294402 Query 188 TCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247 ||||||||||| ||| | |||||||||| | ||| | ||||| ||| |||||| || Sbjct 1294403 -CACCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGAGATAGATCA 1294460 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 |||||||| ||| |||||||| |||||| ||||||||||||| |||||||| ||||||| Sbjct 1294461 TTGCAATTGTTGGTCTTCAACCAGGAATTCCTAGTAAGCGCGAGTCATCAGGTCGCGTTG 1294520 Query 308 ATTACGTCCCTGCCCTTTGTA 328 | ||| |||||| ||||||| Sbjct 1294521 ACTACATCCCTGTTCTTTGTA 1294541 >seq456 Length=204126 Score = 260 bits (288), Expect = 3e-67 Identities = 219/262 (84%), Gaps = 5/262 (2%) Strand=Plus/Plus Query 68 CCGGCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTC 126 ||| ||||||||||||||||| | | | || | | ||||||||||||||||||||||| Sbjct 67426 CCGACTTCTTAGAGGGACTATTGTCATTTAGGCCAACGAAGTTTGAGGCAATAACAGGTC 67485 Query 127 TGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTC 186 |||||| | ||||||||||||| |||||||||||||||||| | | |||||||||| Sbjct 67486 TGTGATATC-TTAGATGTTCTGGACCGCACGCGCGCTACACTAATGTATTCAACGAGTTC 67544 Query 187 ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246 | ||| ||||||| ||||| ||| |||||| | ||| | ||||| |||||||||| | Sbjct 67545 A-CACTTTGGCCGACAGGTC-GGGCAATCTT-TGAAATTTCATCGTGATGGGGATAGATC 67601 Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 ||||||||| ||| ||||||||||||||| |||||||||||| ||||||||| |||| | Sbjct 67602 ATTGCAATTGTTGGTCTTCAACGAGGAATTTCTAGTAAGCGCGAGTCATCAGCTCGCGAT 67661 Query 307 GATTACGTCCCTGCCCTTTGTA 328 || |||| |||||||||||||| Sbjct 67662 GACTACGACCCTGCCCTTTGTA 67683 >seq1817 Length=49288 Score = 152 bits (168), Expect = 1e-34 Identities = 107/121 (88%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 208 GGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAA 267 |||||||||| | ||| | ||||| |||||||||| |||||||||| ||| ||||||| Sbjct 36977 GGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAA 36919 Query 268 CGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGT 327 |||||||| ||||||||||||| ||||||||| |||||||| |||||||||||||||||| Sbjct 36918 CGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGT 36859 Query 328 A 328 | Sbjct 36858 A 36858 >seq1328 Length=1576597 Score = 141 bits (156), Expect = 2e-31 Identities = 95/105 (90%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 |||||||||||||||||||||| | | | || | | ||||||||||||||||||||||| Sbjct 1573462 GCCGGCTTCTTAGAGGGACTATGGACGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGT 1573521 Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||||||||| |||||||||||||||| ||||||||||||||||| Sbjct 1573522 CTGTGATGCCGTTAGATGTTCTGGGCCACACGCGCGCTACACTGA 1573566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947181586432