Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05]
1,944 sequences; 188,794,588 total letters
Query= AAMG01002193.1
Length=560
Score E
Sequences producing significant alignments: (Bits) Value
seq1208 168 2e-39
seq1451 158 4e-36
seq1752 123 8e-26
>seq1208
Length=4595443
Score = 168 bits (186), Expect = 2e-39
Identities = 384/566 (68%), Gaps = 44/566 (8%)
Strand=Plus/Plus
Query 22 GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTA 81
||| ||| | | || ||||| | | |||||||| | ||| ||||||||||| | |||
Sbjct 3844241 GTCACTGCTTATGGATCCGAACCGAGGTGATCTATCTATGACCAGGATGAAGCTTGGGTG 3844300
Query 82 ACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAG 141
| || |||||||||||||| ||| |||||||||||| || ||||||| ||||| |||
Sbjct 3844301 AAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAG 3844360
Query 142 GGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGT 201
||||||| | | | ||| || |||||||||||| |||||| | || ||| |
Sbjct 3844361 CGGTGAAATACCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGTGTTGAGGCATA 3844420
Query 202 GCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTTATGGCTAGGGGGTCA-TTGC 255
|| ||| | || |||| |||||| |||||| || | | | | ||| || |
Sbjct 3844421 GC----AGT-TGACTGGACATCTAGGGGTAAAGCACTATT-TCGAT-GCGGGCCACGAGA 3844473
Query 256 GACTTACCAAACCATTGCAAACTCCGAATGC--------GCATCAGTTTTACCGCGG--- 304
| ||||||| | |||||||| |||| | | ||| | || | ||
Sbjct 3844474 GCGGTACCAAATCGAGGCAAACTCTGAATACTAGAGATGACCTCAAAATAACAGGGGTCG 3844533
Query 305 --------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGAC 356
|||||| |||| | |||| | | | |||||||| || | |||||
Sbjct 3844534 AGGTCGGCCAGTGAGACGGTGGGGGATAAGCTTCATCGTCGAGAGGAAAACAGCCCGGAT 3844593
Query 357 TATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGAC 416
| |||||||||||| ||||||| ||| ||| | | || || || | ||| ||||
Sbjct 3844594 CACTAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTAAGGGTGCAGAGAC 3844651
Query 417 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 476
||| |||| ||| || | |||||| ||| | || ||||||||||||| ||||||||| |
Sbjct 3844652 AGCCAGGAGGTTTGCCTAGAAGCAACCA-CCTTTGAAAGAGTGCGTAATAGCTCACTAAT 3844710
Query 477 CGAGGAGTCGGGCGTGGATAAT-AATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGA-- 533
| || || ||| || || ||| ||| |||| ||| ||||||| ||||||
Sbjct 3844711 CAAGAGCTCTTGCGCCGAAGATGAATGGGG--CTAAGCGATCTGCCGAAGCTGTGGGAAG 3844768
Query 534 TCATTTATATG-ATCGGTAGGGGAGC 558
||| | ||| ||||||||||||||
Sbjct 3844769 TCA---AAATGCATCGGTAGGGGAGC 3844791
>seq1451
Length=538076
Score = 158 bits (174), Expect = 4e-36
Identities = 390/583 (67%), Gaps = 38/583 (7%)
Strand=Plus/Plus
Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61
|||||| | ||||| | ||| ||| | | |||||||| | | |||||||| | |||
Sbjct 515649 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTAGGTGATCTATCTATG 515708
Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121
||||||||||| | ||| | || ||||| || ||||| ||| ||||||||||||
Sbjct 515709 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGATCTGAACCGACTGATGTTGAAAAATC 515768
Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181
|| ||||| | ||||| ||||||||||| || | | ||| | ||||||||||||
Sbjct 515769 AGCGGATGTGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCACAGCTAGCTGGTTCTCC 515828
Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236
|||||| || ||| || ||| | || |||| || ||| |||| ||||
Sbjct 515829 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGAGTAAAGCATTGTT 515883
Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------G 287
| | ||| | | ||| ||||||| | |||||||| |||| |
Sbjct 515884 TTTGTGCGGGACGCGAGAGCG--GTACCAAATCGAGGCAAACTCGGAATACTAGATATGA 515941
Query 288 CATCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCC 336
| ||| | || | || |||||| ||| | |||| | | | |
Sbjct 515942 CCTCAAAATAACAGGGGTCAAGTTCGGCCAGTGAGACGGAGGGGGATAAGTTTCATCGTC 516001
Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAA 396
|||||| || | ||||| | |||||||||| || ||||||| ||| ||| | | ||
Sbjct 516002 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCTCCTAAATGACCGCTCAGTGATA--AA 516059
Query 397 CGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGA 456
|| || || ||| ||||||| |||| ||| || | |||||||||| | || | |||
Sbjct 516060 GGAGGTAGGAGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAGAGA 516118
Query 457 GTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGT 516
|||||||| |||||||| ||||| || ||| || |||| |||| || || |
Sbjct 516119 GTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATAAACGGGGCTT-AGCGAT 516177
Query 517 CTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558
|| ||||||| ||||||| | | ||| ||||||||||||||
Sbjct 516178 CTGCCGAAGCTGTGGGAT-GTCAAAATGCATCGGTAGGGGAGC 516219
>seq1752
Length=3388531
Score = 123 bits (136), Expect = 8e-26
Identities = 139/186 (75%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61
|||||| | ||||| | ||| ||| | | |||||||| | |||||||| | |||
Sbjct 473370 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCTATG 473429
Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121
|||||||||| | ||| | || |||||||||||||| ||| ||||||||||||
Sbjct 473430 ACCAGGATGAAACTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAAAATC 473489
Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181
|| ||||||| ||||| ||||||||||| || | | ||| || ||||||||| ||
Sbjct 473490 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTTTCC 473549
Query 182 CCGAAA 187
||||||
Sbjct 473550 CCGAAA 473555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1689567154176
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |