Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1208 168 2e-39 seq1451 158 4e-36 seq1752 123 8e-26 >seq1208 Length=4595443 Score = 168 bits (186), Expect = 2e-39 Identities = 384/566 (68%), Gaps = 44/566 (8%) Strand=Plus/Plus Query 22 GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTA 81 ||| ||| | | || ||||| | | |||||||| | ||| ||||||||||| | ||| Sbjct 3844241 GTCACTGCTTATGGATCCGAACCGAGGTGATCTATCTATGACCAGGATGAAGCTTGGGTG 3844300 Query 82 ACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAG 141 | || |||||||||||||| ||| |||||||||||| || ||||||| ||||| ||| Sbjct 3844301 AAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAG 3844360 Query 142 GGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGT 201 ||||||| | | | ||| || |||||||||||| |||||| | || ||| | Sbjct 3844361 CGGTGAAATACCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGTGTTGAGGCATA 3844420 Query 202 GCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTTATGGCTAGGGGGTCA-TTGC 255 || ||| | || |||| |||||| |||||| || | | | | ||| || | Sbjct 3844421 GC----AGT-TGACTGGACATCTAGGGGTAAAGCACTATT-TCGAT-GCGGGCCACGAGA 3844473 Query 256 GACTTACCAAACCATTGCAAACTCCGAATGC--------GCATCAGTTTTACCGCGG--- 304 | ||||||| | |||||||| |||| | | ||| | || | || Sbjct 3844474 GCGGTACCAAATCGAGGCAAACTCTGAATACTAGAGATGACCTCAAAATAACAGGGGTCG 3844533 Query 305 --------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGAC 356 |||||| |||| | |||| | | | |||||||| || | ||||| Sbjct 3844534 AGGTCGGCCAGTGAGACGGTGGGGGATAAGCTTCATCGTCGAGAGGAAAACAGCCCGGAT 3844593 Query 357 TATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGAC 416 | |||||||||||| ||||||| ||| ||| | | || || || | ||| |||| Sbjct 3844594 CACTAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTAAGGGTGCAGAGAC 3844651 Query 417 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 476 ||| |||| ||| || | |||||| ||| | || ||||||||||||| ||||||||| | Sbjct 3844652 AGCCAGGAGGTTTGCCTAGAAGCAACCA-CCTTTGAAAGAGTGCGTAATAGCTCACTAAT 3844710 Query 477 CGAGGAGTCGGGCGTGGATAAT-AATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGA-- 533 | || || ||| || || ||| ||| |||| ||| ||||||| |||||| Sbjct 3844711 CAAGAGCTCTTGCGCCGAAGATGAATGGGG--CTAAGCGATCTGCCGAAGCTGTGGGAAG 3844768 Query 534 TCATTTATATG-ATCGGTAGGGGAGC 558 ||| | ||| |||||||||||||| Sbjct 3844769 TCA---AAATGCATCGGTAGGGGAGC 3844791 >seq1451 Length=538076 Score = 158 bits (174), Expect = 4e-36 Identities = 390/583 (67%), Gaps = 38/583 (7%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | | |||||||| | ||| Sbjct 515649 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTAGGTGATCTATCTATG 515708 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || ||||| || ||||| ||| |||||||||||| Sbjct 515709 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGATCTGAACCGACTGATGTTGAAAAATC 515768 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||| | ||||| ||||||||||| || | | ||| | |||||||||||| Sbjct 515769 AGCGGATGTGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCACAGCTAGCTGGTTCTCC 515828 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| || ||| |||| |||| Sbjct 515829 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGAGTAAAGCATTGTT 515883 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------G 287 | | ||| | | ||| ||||||| | |||||||| |||| | Sbjct 515884 TTTGTGCGGGACGCGAGAGCG--GTACCAAATCGAGGCAAACTCGGAATACTAGATATGA 515941 Query 288 CATCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCC 336 | ||| | || | || |||||| ||| | |||| | | | | Sbjct 515942 CCTCAAAATAACAGGGGTCAAGTTCGGCCAGTGAGACGGAGGGGGATAAGTTTCATCGTC 516001 Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAA 396 |||||| || | ||||| | |||||||||| || ||||||| ||| ||| | | || Sbjct 516002 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCTCCTAAATGACCGCTCAGTGATA--AA 516059 Query 397 CGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGA 456 || || || ||| ||||||| |||| ||| || | |||||||||| | || | ||| Sbjct 516060 GGAGGTAGGAGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAGAGA 516118 Query 457 GTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGT 516 |||||||| |||||||| ||||| || ||| || |||| |||| || || | Sbjct 516119 GTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATAAACGGGGCTT-AGCGAT 516177 Query 517 CTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 || ||||||| ||||||| | | ||| |||||||||||||| Sbjct 516178 CTGCCGAAGCTGTGGGAT-GTCAAAATGCATCGGTAGGGGAGC 516219 >seq1752 Length=3388531 Score = 123 bits (136), Expect = 8e-26 Identities = 139/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| | ||| Sbjct 473370 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCTATG 473429 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 |||||||||| | ||| | || |||||||||||||| ||| |||||||||||| Sbjct 473430 ACCAGGATGAAACTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAAAATC 473489 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || ||||||||| || Sbjct 473490 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTTTCC 473549 Query 182 CCGAAA 187 |||||| Sbjct 473550 CCGAAA 473555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689567154176