Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq1752 113 8e-23 seq1451 100 5e-19 seq184 95.1 2e-17 seq1651 80.6 5e-13 >seq1752 Length=3388531 Score = 113 bits (124), Expect = 8e-23 Identities = 161/222 (73%), Gaps = 11/222 (5%) Strand=Plus/Plus Query 31 AGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGGAGTGAGCAAACACACTTTGA 90 || ||| ||||| ||||||| ||| | ||| |||||| | | ||| | | | || Sbjct 472766 AGACGAGGAAGGGCGTAGTAAGCAACGAAATGCTTCGGGGAATT-GAAAATAAGCGTAGA 472824 Query 91 TCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATACATAG 150 | || ||||| |||||| || |||| |||| | ||| |||||||| ||| | Sbjct 472825 TTCGGAGATTCCCGAATAGGTTAACCT-----TTTGA---ACTGC-TGCTGAATCCATGG 472875 Query 151 GTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAA 209 | | |||| || ||| ||||||||||||||||| |||| | ||||||||||| ||| Sbjct 472876 GCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAACCAGAGGAAAAGAAAGCAA 472935 Query 210 CCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 | ||||||| ||||| |||||||||||||||| ||||| Sbjct 472936 AAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCT 472977 >seq1451 Length=538076 Score = 100 bits (110), Expect = 5e-19 Identities = 170/242 (70%), Gaps = 11/242 (5%) Strand=Plus/Plus Query 11 GTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGG 70 |||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| | ||| Sbjct 515026 GTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCAACGAAATGCTTCAGGG 515085 Query 71 AGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTC 130 ||| | ||| | | | ||||| ||||| |||| || |||| |||| Sbjct 515086 AGTT-GAAAATAAGCGTAGATCCAGAGATTCTTGAATAGGTTAACCT-----TTTGA--- 515136 Query 131 ATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTA 189 | | | |||||||| ||| || | |||| || ||| ||||||||||||||||| |||| Sbjct 515137 ACTAC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTA 515195 Query 190 GCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGC 249 || ||||||| ||| ||| | ||||||| ||||| |||||||||| ||||| ||| Sbjct 515196 GCCTGAGGAAAATAAAGCAAAAGTGATTCCCGTAGTAGCGGCGAGCGAACTGGGAGCAGC 515255 Query 250 CT 251 || Sbjct 515256 CT 515257 >seq184 Length=1182610 Score = 95.1 bits (104), Expect = 2e-17 Identities = 142/197 (72%), Gaps = 11/197 (6%) Strand=Plus/Plus Query 56 CGATAAGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAAC 115 ||| | ||| ||| |||| | ||| | | | |||||| ||||| |||||| || ||| Sbjct 718020 CGAAATGCTTCGGAGAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTTAAC 718078 Query 116 CCGGCCCTTTGGGTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAAC 174 |||| | ||| | |||||| ||| || | ||| || ||| ||||||| Sbjct 718079 TT-----TTTGA---ACTGC-TACTGAATCCATGGGCAGACAAGAGACAACCTGGCGAAC 718129 Query 175 TGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAG 234 |||||||||| |||||| ||||||||||| ||| | ||||||| ||||| |||||| Sbjct 718130 TGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAG 718189 Query 235 CGAAATGGGATGAGCCT 251 |||||| ||| ||||| Sbjct 718190 CGAAATAGGAGCAGCCT 718206 >seq1651 Length=2713865 Score = 80.6 bits (88), Expect = 5e-13 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||||||||||| ||||| |||||||||||||| || ||||| Sbjct 1753225 GCGAACTGAAACATCTAAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 1753284 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 1753285 GGCGAGCGAGAGCGGAT 1753301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918382146304