Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1366 663 0.0 seq1328 603 3e-170 seq1470 484 2e-134 seq1394 482 8e-134 seq1018 212 2e-52 >seq1366 Length=583463 Score = 663 bits (734), Expect = 0.0 Identities = 471/533 (88%), Gaps = 9/533 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 401937 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 401996 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||| ||||||||| |||||||||||||||| || |||||||| Sbjct 401997 TTTTAACAGATGTGCCGCCCTAGCCAAACTACCCACCTGACAATGTCCTCTGCCCGGATC 402056 Query 127 GGCCCGC-GAAG-GA-CCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCA 182 ||||||| |||| || |||| ||| ||| | || | || | || || | |||| Sbjct 402057 GGCCCGCCGAAGCGAGCCTTGGGTCCAAAAACAAGG--GTTGTACCCCGCCTCTGATTCA 402114 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242 || ||||||||| |||| ||| ||| ||||||||||||||||||||| ||||||| Sbjct 402115 CGGAGTAAGTAAAATAACGTTAAAAGTAATGGTATTTCACTTGCGCCGAA---GCTCCCA 402171 Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 402172 TTTATCATACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 402231 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 ||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||| Sbjct 402232 CTTCTTTCCCCGCTGATTCTGCCAAGCCTGTTCCCTTGGCTGTGGTTTCGCTGGATAGTA 402291 Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 || |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 402292 GACAGGGACAGTGAGAATCTCGTTAATCCATTTATGCGCGTCACTAATTAGATGACGAGG 402351 Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482 |||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||| Sbjct 402352 CATTTGGCTACCTTAAAAGAGTTATAGTTACTCCCGCCGTTTACCCGCACTTGGTTGAAT 402411 Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 402412 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATC 402464 >seq1328 Length=1576597 Score = 603 bits (668), Expect = 3e-170 Identities = 457/532 (86%), Gaps = 9/532 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||| |||||| |||| | | ||||||| | || |||||| Sbjct 1550642 CTTTTGTTCCACACGAGATTTATGTTCTTGTTGAG-CTCACTTAGGATAACTACGTTATC 1550700 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||| |||||||| |||||||||| | |||||||| || || ||||| Sbjct 1550701 TTTTAACAGATGTGCCACCCCAGCCGAACTCCCCACATAACAATGTCCTCCGCCAGGATC 1550760 Query 127 GGCCCGC-GAAG-GA-CCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCAT 183 ||||||| |||| || |||| ||| ||| || | || | ||| |||| |||| Sbjct 1550761 GGCCCGCCGAAGCGAGCCTTGGGTCCAAAAACAGG--GTTGTACCCCACCTCCGACTCAT 1550818 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 || || ||||| |||| ||| ||||||||||||||||||||| ||| |||||||| Sbjct 1550819 AGAGTACTTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCTGAA---GCTCCCAC 1550875 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 1550876 TTATCCTACACCTCTCAAGTCATTTCACAAAGTCAGACTAGAGTCAAGCTCAACATGGTC 1550935 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 |||||||||||||||||| |||||| | |||||||||| |||||||||||| ||||||| Sbjct 1550936 TTCTTTCCCCGCTGATTCTGCCAAGACTGTTCCCTTGGTTGTGGTTTCGCTGGATAGTAA 1550995 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 | ||||||||||||||||||||| |||||| ||||||||||||||||||||||||| | Sbjct 1550996 ACAGGGACAGTGGGAATCTCGTTCTTCCATTTTTGCGCGTCACTAATTAGATGACGAGAC 1551055 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1551056 ATTTTGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTATCCGCGCTTGGTTGAATT 1551115 Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||| |||||||||||||||||||||||||||||||| | |||| Sbjct 1551116 TCTTCACTTTGATATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATC 1551167 >seq1470 Length=2917085 Score = 484 bits (536), Expect = 2e-134 Identities = 412/512 (80%), Gaps = 42/512 (8%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||| ||||||| |||| | |||||||| ||||||||| Sbjct 2348783 CTTTTGTTCCACACGAGATTTATGTTCTCGTTGAGCTCATCTTAGGACGTCTGCGTTATC 2348842 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||| ||||||||||||||||||||||||||||||||| || ||||||| Sbjct 2348843 TTTTAACAGATGTTCCGCCCCAGCCAAACTCCCCACCTGACAATGTCCTCTGTCCGGATC 2348902 Query 127 GGCCCGC-GAAG-GA-CCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCAT 183 | ||||| |||| || |||| ||| ||| || | || | | |||| |||| Sbjct 2348903 GACCCGCCGAAGCGAGCCTTGGGTCCAAAAACAGGG-GTTGTACCCTGCCTCCGATTCAC 2348961 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 || ||| ||||| |||| ||| ||||||||||||||||||||||||| |||||||| Sbjct 2348962 GGAGTAAATAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGAA---GCTCCCAC 2349018 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| |||||||||||| |||||||| Sbjct 2349019 TTATCCTACACCTCTCA-----------------------------------ACAGGGTC 2349043 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 ||||||||||||||||| ||||||||||||||||| ||| |||||| ||| |||||||| Sbjct 2349044 TTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTAGCTATGGTTTTGCTGGATAGTAG 2349103 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 | |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 2349104 ACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCACGTCACTAATTAGATGACGAAGC 2349163 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||| Sbjct 2349164 ATTTGGCTACCTTGAGAGAGTCATAGTTACTCCCGTCGTTTACCCGCGCTTGGTTAAATT 2349223 Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGA 515 |||||||||||||||||||||||||||||||| Sbjct 2349224 TCTTCACTTTGACATTCAGAGCACTGGGCAGA 2349255 >seq1394 Length=2969664 Score = 482 bits (534), Expect = 8e-134 Identities = 353/404 (87%), Gaps = 7/404 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 2762001 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 2761942 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 2761941 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCCTCAGCCCGGATC 2761882 Query 127 GGCCCGC-GAAG-GA-CCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCAT 183 |||||| |||| || |||| ||| ||| || | || | || |||| |||| Sbjct 2761881 AGCCCGCCGAAGAGAGCCTTGGGTCCAAAAACAGGG-GTTGTACCCCGCCTCCGATTCAC 2761823 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 || ||||||||| |||| ||| |||||||||||||||||| |||||| |||||||| Sbjct 2761822 GGAGTAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGTGCCGAA---GCTCCCAC 2761766 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2761765 TTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 2761706 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 |||||||||||||||||| ||||||||||||||||||| |||||||||| | |||||||| Sbjct 2761705 TTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGTTGTGGTTTCGTTGGATAGTAG 2761646 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407 | |||||||||||||||||||||||||||||||||||||||||| Sbjct 2761645 ACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 2761602 >seq1018 Length=1246924 Score = 212 bits (234), Expect = 2e-52 Identities = 128/134 (96%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 402 GTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCG 461 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || Sbjct 810879 GTCACTAATTAGATGACGAGACATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGTCG 810938 Query 462 TTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 810939 TTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACT-GACAGAAATCAC 810997 Query 522 ATTGCGTCAACATC 535 ||||||| | |||| Sbjct 810998 ATTGCGTTAGCATC 811011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635168211712