Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq1208 125 2e-26 seq1451 107 7e-21 >seq1208 Length=4595443 Score = 125 bits (138), Expect = 2e-26 Identities = 128/166 (77%), Gaps = 6/166 (4%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 3846598 TCGTTACGCCTTTCGTGCAGGTCAGAACTTACACGACAAGGAATTTCGCTACCTTAGGAC 3846539 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGG 505 ||||||||||| ||| ||| || ||||||| | ||| ||| || || Sbjct 3846538 CGTTATAGTTACGGTCGCTGTTCACCGGGGCTT-TGGTCGCCGTCTC-----CCCTGTCA 3846485 Query 506 TGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAG 551 | | |||| | ||| |||||||||||| ||||||||||||| Sbjct 3846484 TCAGGTCACCAACTTCCTTGACCTTCCAGCACTGGGCAGGCGTCAG 3846439 >seq1451 Length=538076 Score = 107 bits (118), Expect = 7e-21 Identities = 82/97 (85%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||| ||| |||||||||||||| |||||||||||| |||||||||||| Sbjct 516997 TCGTTACGCCTTTCATGCGGGTCGGAACTTACCTGACAAGGAATTTTGCTACCTTAGGAC 516938 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAAT 482 ||||||||||| ||||| || || || |||| || Sbjct 516937 CGTTATAGTTACGGCCGCCATTCACCTGGCCTTCGAT 516901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702366905344