Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05]
1,944 sequences; 188,794,588 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq1018 109 9e-22
seq1328 91.5 2e-16
>seq1018
Length=1246924
Score = 109 bits (120), Expect = 9e-22
Identities = 99/122 (81%), Gaps = 2/122 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| || ||||||| | ||| || ||| || ||||
Sbjct 810792 GTACGAGAGGAACCGTTGA-TTCGCAA-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 810735
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||||| ||||||||||| |||||||||||||||||||||||| || |
Sbjct 810734 GGCGCGAAGCTACCATGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 810675
Query 121 GA 122
||
Sbjct 810674 GA 810673
>seq1328
Length=1576597
Score = 91.5 bits (100), Expect = 2e-16
Identities = 89/112 (79%), Gaps = 2/112 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||| |||||||||| || ||| | ||||||||| | ||| || ||| || ||||
Sbjct 1550319 GTACAAGAGGAACCGTTGA-TTC-GCATAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1550262
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112
| |||||| ||||||| ||||||||||| || || ||||||||||||||||
Sbjct 1550261 GGCGCGAATCTACCATGCGCTGGATTATGACTAAATGCCTCTAAGTCAGAAT 1550210
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819184572416
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |