Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq1018 109 9e-22 seq1328 91.5 2e-16 >seq1018 Length=1246924 Score = 109 bits (120), Expect = 9e-22 Identities = 99/122 (81%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| || ||||||| | ||| || ||| || |||| Sbjct 810792 GTACGAGAGGAACCGTTGA-TTCGCAA-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 810735 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| ||||||||||| |||||||||||||||||||||||| || | Sbjct 810734 GGCGCGAAGCTACCATGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 810675 Query 121 GA 122 || Sbjct 810674 GA 810673 >seq1328 Length=1576597 Score = 91.5 bits (100), Expect = 2e-16 Identities = 89/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| |||||||||| || ||| | ||||||||| | ||| || ||| || |||| Sbjct 1550319 GTACAAGAGGAACCGTTGA-TTC-GCATAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1550262 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 | |||||| ||||||| ||||||||||| || || |||||||||||||||| Sbjct 1550261 GGCGCGAATCTACCATGCGCTGGATTATGACTAAATGCCTCTAAGTCAGAAT 1550210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819184572416