Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1328 526 7e-147 seq1394 307 3e-81 seq1366 248 3e-63 seq329 228 2e-57 seq20 138 3e-30 >seq1328 Length=1576597 Score = 526 bits (582), Expect = 7e-147 Identities = 396/459 (86%), Gaps = 9/459 (2%) Strand=Plus/Minus Query 54 ACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGT 113 |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 1564124 ACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGTGCCTGCTGCCTTCCTTGGATGCGGT 1564065 Query 114 AGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATAC 173 |||||||||||||||||||||||| ||||| ||||||||||| |||| |||| || || Sbjct 1564064 AGCCGTTTCTCAGGCTCCCTCTCCAGAATCAAACCCTAATTCTCCGTCACCCATTACCAC 1564005 Query 174 CATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATC 233 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 1564004 CATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTC 1563945 Query 234 GCCGGCTC-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGG---AGCCCCGA 289 ||| || | |||||||||| |||||| |||||| |||||||| ||| | | | | Sbjct 1563944 GCCAGCACAAAGGCCATGCAATTCGTCGAGTTATCATGAATCATCAAAGCAATGGACAGC 1563885 Query 290 AG--GGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCA 346 || |||| | ||||||||||||| | |||||||||| |||||| |||||| | ||| Sbjct 1563884 AGCCCGCGTCGACCTTTTATCTAATAAGTGCACCCCTTCCAGAAGTCAGGGTTTGTTGCA 1563825 Query 347 TGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGAT 406 |||||| |||||||||||| | |||||||| |||||| || ||| |||||| |||| || Sbjct 1563824 CGTATTATCTCTAGAATTACTATGGTTATCCGTGTAGT-AGTTACCATCAAACAAACTAT 1563766 Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGC 465 |||||||||||||| |||||||||||||||| || | ||| | | ||||||| |||||| Sbjct 1563765 AACTGATTTAATGATCCATTCGCAGTTTCACAGTCTGAATTCGTTCATACTTACACATGC 1563706 Query 466 ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||| Sbjct 1563705 ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 1563667 >seq1394 Length=2969664 Score = 307 bits (340), Expect = 3e-81 Identities = 213/238 (89%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 ||||||||||||||| |||| |||| |||||| |||| ||||||||||||||||| | Sbjct 2761355 ACTCATTCCAATTACCAGACTCAAA-GAGCCCGGTATTGTTATTTATTGTCACTACC--C 2761299 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 ||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 2761298 CCGTGTCAGGATTGGGTAATTTGCGCGCCTCCTGCCTTCCTTGAATGTGGTAGCCGTTTC 2761239 Query 123 TCAGGCTCCCTCTCCGGAATCG-AACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 |||||||||||||||||||||| ||||||||||| | || ||||||| |||||||||| Sbjct 2761238 TCAGGCTCCCTCTCCGGAATCGAAACCCTAATTCTCAGTCACCCGTTACCACCATGGTAG 2761179 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 ||||||||| ||||||||||||||||||||| |||||||||||||| | ||||| || Sbjct 2761178 GCCACTATCTTACCATCGAAAGTTGATAGGGTAGAAATTTGAATGATGCGTCGCCAGC 2761121 >seq1366 Length=583463 Score = 248 bits (274), Expect = 3e-63 Identities = 219/266 (82%), Gaps = 8/266 (3%) Strand=Plus/Plus Query 246 CCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGCC--CCGAAGGGCGTT--GGT 300 ||||||||| ||| |||||| |||||||| || || | | | |||| |||| | Sbjct 381007 CCATGCGATCCGTCGAGTTATCATGAATCATCAGAGCAACGGGCAGAAGCCCGTTTCGAC 381066 Query 301 TTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTA 359 ||||||||||||||| || ||||||| ||||||||||||| | ||| |||||||||||| Sbjct 381067 CTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTA 381126 Query 360 GAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 419 || |||| |||||||||| |||||| | ||| |||||| |||| ||||||||||||||| Sbjct 381127 GATTTACTACGGTTATCCGAGTAGTA-GTTACCATCAAACAAACTATAACTGATTTAATG 381185 Query 420 AGCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTT 478 ||||||| |||||||||| | | ||| || ||||||| ||||||||||||||||||| Sbjct 381186 AGCCATTTGCAGTTTCACAATCTGAATTCGTTCATACTTACACATGCATGGCTTAATCTT 381245 Query 479 TGAGACAAGCATATGACTACTGGCAG 504 ||| |||| | ||||||||||||||| Sbjct 381246 TGACACAAACGTATGACTACTGGCAG 381271 >seq329 Length=151530 Score = 228 bits (252), Expect = 2e-57 Identities = 176/205 (86%), Gaps = 3/205 (1%) Strand=Plus/Plus Query 302 TTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||||||| || | ||||| ||||| ||||||| | ||| ||||||||||||| Sbjct 6936 TTTTATCTAATAAATGCATCTCTTCCAGAAGTTGGGGTTTGTTGCACGTATTAGCTCTAG 6995 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||| ||||||||| |||||| | || |||||| |||| |||| ||||||||||| Sbjct 6996 AATTACTACGGTTATCAGAGTAGTA-GTAACCATCAAACAAACTATAAATGATTTAATGA 7054 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTT 479 |||||||||| |||||| || | ||| || ||||||| |||||||||||||||||||| Sbjct 7055 GCCATTCGCAATTTCACAGTCTGAATTCGTTCATACTTACACATGCATGGCTTAATCTTT 7114 Query 480 GAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||| |||| Sbjct 7115 GAGACAAGCATATGACTACTAGCAG 7139 >seq20 Length=2941094 Score = 138 bits (152), Expect = 3e-30 Identities = 128/160 (80%), Gaps = 7/160 (4%) Strand=Plus/Plus Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAAC 409 ||||||| ||||||||| | ||||||||| |||||| | ||| |||||| |||| |||| Sbjct 489791 ATTAGCTTTAGAATTACTATGGTTATCCAAGTAGTA-GTTACCATCAAACAAACTATAAT 489849 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGT----ATAGA--TTGCTTATACTTAGACAT 463 |||||||||||| ||||| ||||| ||| | || || ||| | ||||||| |||| Sbjct 489850 TGATTTAATGAGTCATTCAGAGTTTTACTATCTGAATTGAATTTGTTCATACTTACACAT 489909 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 || | ||| || ||||||| ||||||||||||||| ||| Sbjct 489910 TCACGACTTTATATTTGAGATAAGCATATGACTACTCGCA 489949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510370637824