Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1639 150 1e-31 >seq1639 Length=5101707 Score = 150 bits (166), Expect = 1e-31 Identities = 568/878 (65%), Gaps = 21/878 (2%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| | || || || ||| |||||||| || || ||||| || |||| Sbjct 2280327 TGTTCCCAATCCACTACCCAGAGATCTGGGAGATGTACAAGAAAGCCGAAGCATCGTTCT 2280268 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGT----TTATCG 61179 |||| | || || || ||| | || |||||| || |||||| | | || Sbjct 2280267 GGACCGCTGAAGAAGTAGATCTATCACAAGACAATCGCGATTGGGAGAACAATCTCAACG 2280208 Query 61180 AGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATC 61239 | |||||||| || ||||| ||||| || | || ||||| ||||| || ||||| ||| Sbjct 2280207 A-CGGTGAACGTCACTTCATCAAACACGTCCTCGCTTTCTTCGCCGCATCTGACGGAATC 2280149 Query 61240 GTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGT 61299 || |||||| | || ||| | || || ||||| |||||||||||| | Sbjct 2280148 GTGTTAGAGAATCTCGCTTCTCGATTCATGTCCGATGTTCAAGTCTCGGAGGCGCGTGCT 2280089 Query 61300 TTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATC 61359 ||||| || |||||||| || || || || | ||||| |||||||| ||| | || || Sbjct 2280088 TTCTATGGTTTCCAGATCGCGATTGAAAACATTCACTCCGAGATGTATAGTCTCCTTCTC 2280029 Query 61360 GATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATA 61419 |||||||| |||| || || | || | | || || || || ||||| Sbjct 2280028 GATACGTATATCAAAGATAACAAAGAGAGAGATCATCTATTTCGCGCGATTGAAACGATT 2279969 Query 61420 CC-GGCG--GTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCT 61476 || ||| | ||| |||||| | ||||| | || |||||| | | | | Sbjct 2279968 CCTTGCGTCGCGAA---GAAAGCTCAGTGGGCGATGAAATGGATCGACGG---ATCTCAA 2279915 Query 61477 ACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCG 61536 || || | ||||||| | | || || || || || || | || ||| |||| Sbjct 2279914 ACCTTCGCTGAACGAATTGTAGCTTTCGCTTGTGTTGAAGGCATCTTCTTCTCTGGAAGC 2279855 Query 61537 TTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAAT 61596 ||| | | ||||| ||| | |||||||| || || ||||| || | || ||| || Sbjct 2279854 TTTTGCTCCATCTTCTGGCTTAAGAAACGAGGTCTCATGCCTGGGTTAACTTTCTCAAAC 2279795 Query 61597 GAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGC 61656 || ||||| ||||| ||||| ||| | || || ||||| ||| || || | || || | Sbjct 2279794 GAATTGATCTCACGAGACGAAGGCTTACACTGCGATTTCGCTTGCTTACTCTACACACTC 2279735 Query 61657 TATCTGGTGAATCGTCCGTCGGAGGAGCGTGT-GGGTGAGATTGTTCGTGAGGCGGTAAC 61715 || || | || || || ||| | || | || ||| |||| ||||| Sbjct 2279734 -CTCAAAACAAAGCTGAGT--GAAGAACGTATCAAGTCA-ATCGTTTGTGATGCGGTCGA 2279679 Query 61716 TATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGG 61775 || || || ||| || ||||| | || | | | | || ||||| ||| Sbjct 2279678 GATTGAGAGAGAGTTTGTGTGCGACGCGCTTCCGTGCGCGTTGGTTGGTATGAACCGTGA 2279619 Query 61776 ACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT-TTGGGTATGA 61834 | ||| ||||||||||| |||||||| || | || |||| | | ||||||| | Sbjct 2279618 TTTGATGAGTCAGTATATTGAGTTTGTTGCGGATAGGCTTTTGGGTGCTCTTGGGTACGG 2279559 Query 61835 AGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCA 61894 || | || | ||| || || ||||||| ||||| | || || || | || | Sbjct 2279558 TAAGG-TGTACGGTGCGACTAATCCCTTTGATTGGATGGAACTAATCTCTCTTCAGGGGA 2279500 Query 61895 AGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAA 61932 | || || ||||||||||||||||| || || || ||| Sbjct 2279499 AAACCAACTTTTTCGAGAAACGTGTTGGTGATTACCAA 2279462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397558580620160