Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq178 132 5e-26 seq3 122 1e-22 >seq178 Length=2153606 Score = 132 bits (146), Expect = 5e-26 Identities = 137/178 (77%), Gaps = 1/178 (1%) Strand=Plus/Plus Query 160156 TTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGC 160215 || |||||| ||||||||||| ||||| ||||||||| || |||| || || ||||| Sbjct 356578 TTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAACTCCTGTTGCAGCTGC 356637 Query 160216 TTCT-GCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTC 160274 || ||||| ||| | |||| || | || ||||| ||| || |||| |||||||| Sbjct 356638 GACTTGCTGTTTTCTTGATCTATCCAATTGGGCAGGGAAGTTTTTCTGATGGTATGCCTC 356697 Query 160275 TTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCT 160332 | || |||||||||||||| |||| |||| ||||| |||| || || ||||| || || Sbjct 356698 TAGGAATCTCTGGTACTTTCAACTTTATGATTGTACTCCAGGCTGAGCACAACATTCT 356755 >seq3 Length=3374423 Score = 122 bits (134), Expect = 1e-22 Identities = 146/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 160969 TATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGT 161028 || || ||||| || ||||| ||||| || | || || ||||| || ||||||||| Sbjct 1010032 TACGTTCTTGATGCGGCTGAGGAAGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGT 1009973 Query 161029 GCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCT 161088 |||| || | ||||||||||| ||| | ||| |||| || || ||||| || | Sbjct 1009972 TCTTGTTCGAGCTGTGCTGGTAAAGTTGCGTCTGGATCTGTTGACCAGTCTGACCAGAGT 1009913 Query 161089 TTCCTGGATGATGATCAACTTGAATCA-GGATTTGTCCTGACCTGCGTTGCTTATCCCAC 161147 ||||| |||||||| || || ||||| || ||||| || || || || |||||||| || Sbjct 1009912 TTCCTTGATGATGACCAGATT-AATCAAGGGTTTGTTCTCACTTGTGTGGCTTATCCTAC 1009854 Query 161148 TTCTGATGTAACTATT 161163 ||||||||| || ||| Sbjct 1009853 TTCTGATGTTACCATT 1009838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551362601563200