Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq178 100 4e-16 >seq178 Length=2153606 Score = 100 bits (110), Expect = 4e-16 Identities = 132/179 (74%), Gaps = 3/179 (2%) Strand=Plus/Plus Query 189204 TTACCGTCTCGGTATGCGTCCTTGGATCTGCA-TTGCTTACTCTGCACCTGTTGCAGCAG 189262 || |||||| ||||||||||||||||| ||| |||| || || | ||||||||||| | Sbjct 356578 TTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAACTCCTGTTGCAGCTG 356636 Query 189263 CATCC-GCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCC 189321 | | || || || || ||||||| |||| || || ||| ||||| | ||||| Sbjct 356637 CGACTTGCTGTTTTCTTGATCTATCCAATTGGGCAGGGAAGTTTTTCTGATGGTATGCCT 356696 Query 189322 TTGGGTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCT 189380 | || ||| ||| || ||||||| ||| |||| |||| || ||||||||||| || Sbjct 356697 CTAGGAATCTCTGGTACTTTCAACTTTATGATTGTACTCCAGGCTGAGCACAACATTCT 356755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634064591856000