Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq178 136 4e-27 >seq178 Length=2153606 Score = 136 bits (150), Expect = 4e-27 Identities = 138/176 (78%), Gaps = 3/176 (2%) Strand=Plus/Plus Query 160928 CCGCCTCGGCATGCGCCCCTGGATCTGC-GTTGCATATTCTGCACCTGTTGCTGCTGCGA 160986 ||| || || ||||| || ||||| ||| ||||||||||| | |||||||| ||||||| Sbjct 356581 CCGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAACTCCTGTTGCAGCTGCGA 356639 Query 160987 GT-GCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTG 161045 | || || ||| | ||||||| | || || || ||| |||||||||||||| || Sbjct 356640 CTTGCTGTTTTCTTGATCTATCCAATTGGGCAGGGAAGTTTTTCTGATGGTATGCCTCTA 356699 Query 161046 GGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCT 161101 || ||||||||||| |||||||| ||| |||| ||||||| || |||||||| || Sbjct 356700 GGAATCTCTGGTACTTTCAACTTTATGATTGTACTCCAGGCTGAGCACAACATTCT 356755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559314408329600