Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq1728 89.7 7e-13 >seq1728 Length=1434513 Score = 89.7 bits (98), Expect = 7e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 162607 GCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACA 162666 |||| || ||| || | ||||||||||| | ||| |||| |||| ||||| || Sbjct 580535 GCCTGTAACGGAATCTTGTTCAATCACGAGTCACCGCGCCGAGGTGAGAACTTCGTGACT 580594 Query 162667 CGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGTGATCTACAACTT 162726 | |||||| |||||||| || || | || || | || || | || ||| Sbjct 580595 AGGAAGATCACAAGAGCCTTGGGACGGATCAAGGTTGGTTTGCAGAGGAAGCTCTTCCTT 580654 Query 162727 GGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGG 162786 || || || | || | | || |||||| || |||||| || || || |||||| Sbjct 580655 GGGAATCTGCAGGCAGCAAGAGATTGGGGATTTGCAGGAGACTATGTGGAAGCAATGTGG 580714 Query 162787 TTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAAC 162830 |||||| | ||||||||||||||||||||||| || | ||||| Sbjct 580715 TTGATGTTGCAGCAAGAGAAGCCAGATGATTACGTTGTGGCAAC 580758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691442397541440