Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq5 159 9e-37 seq257 127 5e-27 seq15 96.9 9e-18 seq2 80.6 7e-13 >seq5 Length=38841276 Score = 159 bits (176), Expect = 9e-37 Identities = 239/335 (71%), Gaps = 12/335 (4%) Strand=Plus/Minus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||| ||||| | |||||||||||||||||| | | ||| ||||| | Sbjct 6702150 GAGGAAGAAGCCCCGGATAACTCCCTGCCAGCAGCCGCGGTAAAATGGGGGGGGCAAGTG 6702091 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTT----GTGTAAGACAGGTGTG 123 || ||||||| ||| ||||||||| || || ||||| | || || || || Sbjct 6702090 TTCTTCGGAATGACTAGGCGTAAAGGACACGTAGACGGTTCATCGGGTT-GAAAG---TG 6702035 Query 124 AAATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||| | | | || ||| | | ||| || | || | ||| ||||| | |||| Sbjct 6702034 AAAGTC---GTCAAAAAGTGGCGGAATGCTTTCGAAACCACTGAACTTGAGTGAGACAGA 6701978 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||||| | ||| || ||||||| ||| | | |||||| |||| | Sbjct 6701977 GGAGAGTGGAATTTCGTGTGGAGGGGTGAAATCTACGGATCTACGAAGGAACGCCAAAAG 6701918 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||||||||| | ||||| || |||||| || ||||||| |||||||| ||| | Sbjct 6701917 CGAAGGCAGCTCTCTGGGTCTCTACCGACGCTGGTGTGCGAAAGCTTGGGGAGCGAACGG 6701858 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||||||||| ||| |||||||| Sbjct 6701857 GATTAGATACCCTGGTAGTCCGTGCCGTAAACGAT 6701823 Score = 150 bits (166), Expect = 5e-34 Identities = 237/335 (71%), Gaps = 12/335 (4%) Strand=Plus/Minus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||| ||||| | |||||||||||||||||| | | ||| ||||| | Sbjct 6687303 GAGGAAGAAGCCCCGGATAACTCCCTGCCAGCAGCCGCGGTAAAATGGGGGGGGCAAGTG 6687244 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTT----GTGTAAGACAGGTGTG 123 || ||||||| ||| ||||||||| || || ||||| | || || || || Sbjct 6687243 TTCTTCGGAATGACTAGGCGTAAAGGACACGTAGACGGTTCATCGGGTT-GAAAG---TG 6687188 Query 124 AAATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||| | | | || ||| | | ||| || | || | ||| ||||| | |||| Sbjct 6687187 AAAGTC---GTCAAAAAGTGGCGGAATGCTTTCGAAACCACTGAACTTGAGTGAGACAGA 6687131 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||||| | ||| || ||||||| ||| | | ||||| |||| | Sbjct 6687130 GGAGAGTGGAATTTCGTGTGGAGGGGTGAAATCTACGGATCTACGAAGGAATGCCAAAAG 6687071 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 ||||||||| | ||||| || |||||| || ||||||| |||||||| ||| | Sbjct 6687070 TGAAGGCAGCTCTCTGGGTCTCTACCGACGCTGGTGTGCGAAAGCTTGGGGAGCGAACGG 6687011 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||||||||| ||| |||||||| Sbjct 6687010 GATTAGATACCCTGGTAGTCCGTGCCGTAAACGAT 6686976 >seq257 Length=139883 Score = 127 bits (140), Expect = 5e-27 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||| | ||| ||| |||||||||||||| || | | ||||||||| |||||| || Sbjct 23916 GGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGC 23975 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 | | ||||| |||||||| || | |||||||| ||||||| || |||||||| Sbjct 23976 ACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGA 24035 Query 310 TACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCCTTG- 368 ||||| ||||||| ||| |||||||| ||||| | || | | | || || Sbjct 24036 TACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGACCCGTGC 24095 Query 369 -GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || ||||||||||||| |||| ||||||||||| ||| Sbjct 24096 AGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 24137 Score = 102 bits (112), Expect = 2e-19 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||| | ||| ||| |||||||||||||| || | | ||||||||| |||||| || Sbjct 17236 GGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGC 17295 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 | | ||||| |||||||| || | |||||||| ||||||| || |||||||| Sbjct 17296 ACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGA 17355 Query 310 TACCCTGGTAGTCC 323 ||||| ||||||| Sbjct 17356 TACCCCAGTAGTCC 17369 Score = 95.1 bits (104), Expect = 3e-17 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||| | ||| ||| |||||||||||||| || | | ||||||||| |||||| || Sbjct 9482 GGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGC 9541 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 | | ||||| |||||||| || | |||||||| ||||||| || |||||||| Sbjct 9542 ACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGA 9601 Query 310 TACCC 314 ||||| Sbjct 9602 TACCC 9606 >seq15 Length=50573455 Score = 96.9 bits (106), Expect = 9e-18 Identities = 211/315 (67%), Gaps = 6/315 (2%) Strand=Plus/Minus Query 22 GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATT-- 79 ||||||||| ||||| ||||| | |||||||| | | |||||| ||| || ||| | Sbjct 13187256 GGCTAACTATGTGCCGGCAGCTGTGGTAATACAGAAGATGCAAGTGTTT-TCTGAAATGA 13187198 Query 80 ---ACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGGCT 136 | |||| ||||| ||| | ||| || | | ||| | | || ||||| | ||||| Sbjct 13187197 TTGATTGGGTGTAAAACGTCTGTAGGTGGCTTTTTAAATCCGCCGTCAAATCTCAGGGCT 13187138 Query 137 TAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAATTC 196 |||| ||| ||| | | ||| | || |||| | ||||| | |||| Sbjct 13187137 CAACCATGGACAGGCAGTGGAAACTACCAAGCTTGAGTACGGTAGAGGCAGAGAAAATTT 13187078 Query 197 CACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCC 256 | ||| | | |||||||||||| | || | | ||||||||| | || ||| | Sbjct 13187077 CTGGTGGAACGGTGAAATGCGTATAGATCGGAAAGAACACCAACGATAAAAGCACTCTGT 13187018 Query 257 TGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTG 316 |||| | |||||| || | |||||||| |||||||| |||||||||||||| Sbjct 13187017 TGGGCCGATACTGACACTGAGAGACGAAAGCTAAAGGAGCAAATAGGATTAGATACCCCA 13186958 Query 317 GTAGTCCACGCCCTA 331 |||||| ||| || Sbjct 13186957 CTAGTCCTAGCCGTA 13186943 >seq2 Length=25468329 Score = 80.6 bits (88), Expect = 7e-13 Identities = 70/87 (80%), Gaps = 4/87 (5%) Strand=Plus/Minus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC----GTAGGGTGCA 63 || ||| |||| |||||||||| ||| |||||||||||||||| || | |||| ||| Sbjct 9974199 GAGGAAGAAGCCCCGGCTAACTCCGTACCAGCAGCCGCGGTAAAACGGGAGGAGGGGGCA 9974140 Query 64 AGCGTTAATCGGAATTACTGGGCGTAA 90 || ||| ||||||| ||| ||||||| Sbjct 9974139 AGTGTTCTTCGGAATGACTAGGCGTAA 9974113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289474315584