Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq257 475 1e-131 seq25 188 2e-45 seq5 188 2e-45 seq10 134 4e-29 seq2 107 6e-21 seq8 93.3 1e-16 >seq257 Length=139883 Score = 475 bits (526), Expect = 1e-131 Identities = 406/497 (82%), Gaps = 3/497 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 24135 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 24194 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 24195 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 24254 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | || |||||| || | ||||||| ||||||| ||||||||| Sbjct 24255 TTGAAAGAGAGGGGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 24312 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 24313 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 24372 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || | || |||| || || || | |||||||||||| || ||||||||||||| ||| Sbjct 24373 CACCGTTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 24432 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| ||||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 24433 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 24492 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| |||||||| ||| || ||| ||| || |||||||||||||| Sbjct 24493 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 24552 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479 || |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | Sbjct 24553 CAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 24612 Query 480 CGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 24613 CGGTGAATTCGTTCCCG 24629 >seq25 Length=1845724 Score = 188 bits (208), Expect = 2e-45 Identities = 184/236 (78%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || |||| |||||||||| ||||||| || |||| |||||||| Sbjct 1242535 GACTGCCAGTGATATACTGGAGAAAGGTGGGGATAACGTCAAGTCCGCATGGCCCTTATG 1242476 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| |||||||||||||||||| | ||||| ||| ||| | | | ||| | Sbjct 1242475 GGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGA 1242416 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446 || ||||| || ||| ||||||||||||||| ||||||||||| | |||||| Sbjct 1242415 GCGAATCCGGAAAGATTGC-CTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGT 1242357 Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 |||||||||||||||||| ||||||||||| ||||||||| || |||| |||| Sbjct 1242356 TGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 1242301 >seq5 Length=38841276 Score = 188 bits (208), Expect = 2e-45 Identities = 184/236 (78%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || |||| |||||||||| ||||||| || |||| |||||||| Sbjct 6701221 GACTGCCAGTGATATACTGGAGAAAGGTGGGGATAACGTCAAGTCCGCATGGCCCTTATG 6701162 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| |||||||||||||||||| | ||||| ||| ||| | | | ||| | Sbjct 6701161 GGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGA 6701102 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446 || ||||| || ||| ||||||||||||||| ||||||||||| | |||||| Sbjct 6701101 GCGAATCCGGAAAGATTGC-CTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGT 6701043 Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 |||||||||||||||||| ||||||||||| ||||||||| || |||| |||| Sbjct 6701042 TGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 6700987 Score = 183 bits (202), Expect = 9e-44 Identities = 183/236 (78%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || |||| |||||||||| ||||| | || |||| |||||||| Sbjct 6686374 GACTGCCAGTGATATACTGGAGTAAGGTGGGGATTACGTCTAGTCCGCATGGCCCTTATG 6686315 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| |||||||||||||||||| | ||||| ||| ||| | | | ||| | Sbjct 6686314 GGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGA 6686255 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446 || ||||| |||| | | ||||||||||||||| ||||||||||| | |||||| Sbjct 6686254 GCGAATCCGG-AAAGATTTCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGT 6686196 Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 || ||||||||||||||| ||||||||||| ||||||||| || |||| |||| Sbjct 6686195 TGTAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 6686140 Score = 165 bits (182), Expect = 2e-38 Identities = 169/218 (78%), Gaps = 17/218 (8%) Strand=Plus/Minus Query 17 AAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAG 76 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 6701740 AAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTCGATA 6701681 Query 77 CAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTC 136 |||||| |||||||||||| ||||||| | ||| | |||| | | || Sbjct 6701680 CAACGCACAGAACCTTACCAGCCCTTGACA---TATGAAC------GAGA-AACCCTATC 6701631 Query 137 CCCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCG 189 | ||| || || || | ||||||| ||||||| |||||||||||||||||| Sbjct 6701630 CTTAACGGGATGGTACTGACTTTCATACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCG 6701571 Query 190 TGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||||||||| |||||||| | |||||||| |||||| Sbjct 6701570 TGAGATGTTTGGTTAAGTTCTATAACGAGCGAAACCCT 6701533 Score = 161 bits (178), Expect = 3e-37 Identities = 168/218 (77%), Gaps = 17/218 (8%) Strand=Plus/Minus Query 17 AAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAG 76 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 6686893 AAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTCGATA 6686834 Query 77 CAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTC 136 ||| || |||||||||||| ||||||| | ||| | |||| | | || Sbjct 6686833 CAATGCTCAGAACCTTACCAGCCCTTGACA---TATGAAC------GAGA-AATCCTATC 6686784 Query 137 CCCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCG 189 | ||| || || || | ||||||| ||||||| |||||||||||||||||| Sbjct 6686783 CTTAACGGGATGGTACTGACTTTCATACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCG 6686724 Query 190 TGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||||||||| |||||||| | |||||||| |||||| Sbjct 6686723 TGAGATGTTTGGTTAAGTTCTATAACGAGCGAAACCCT 6686686 >seq10 Length=22354415 Score = 134 bits (148), Expect = 4e-29 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 246 TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGT 305 || |||| || || || | |||||||||||| || ||||||||||||| ||| ||||| Sbjct 14528964 TTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGT 14528905 Query 306 CAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGG 365 ||| ||||||||||||||||| ||||| |||||||||||||||||| | ||||||| Sbjct 14528904 CAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGACAAAGG 14528845 Query 366 GCAGCGAAACCGCGAGG 382 | |||| |||||||| Sbjct 14528844 GTCGCGATCCCGCGAGG 14528828 >seq2 Length=25468329 Score = 107 bits (118), Expect = 6e-21 Identities = 126/171 (74%), Gaps = 12/171 (7%) Strand=Plus/Minus Query 82 CGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCTT 141 ||||||||||||||| |||||||| |||| ||||| | | ||||| | | Sbjct 4842959 CGAAGAACCTTACCAGGGATTGACATCTCCTGAATCCTCTTAAAAGAGAGGGGTAC---- 4842904 Query 142 CGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGG 201 | ||||| |||||| || ||| ||||||||||||||| ||| | ||||||| Sbjct 4842903 --GTGGACA------CAGGTGGTGTGTGGCTGTCGTCAGCTCGTGCCGTAAAGTGTTGGG 4842852 Query 202 TTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTT 252 ||||||||| |||||||| ||||||| | | || | ||||| |||| |||| Sbjct 4842851 TTAAGTCCCACAACGAGCACAACCCTCATGTTTGGCTGCCAACATTGAGTT 4842801 >seq8 Length=29345952 Score = 93.3 bits (102), Expect = 1e-16 Identities = 113/149 (76%), Gaps = 4/149 (3%) Strand=Plus/Minus Query 330 TGGGCTACACACGTGCTACAATGGACAAT-ACAAAGGGCAGCGAAACC-GCGAGGTCAAG 387 || || ||||| ||||||||||| ||||| |||| ||| ||| | | |||| || Sbjct 2534952 TGAGCCACACAGGTGCTACAATG-ACAATTACAATGGGAAGCAAGGGTTGTAAGGTGGAG 2534894 Query 388 CAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCT 447 ||||| || ||| ||||||||||||||| |||| | |||| | |||||| | Sbjct 2534893 TGAATCCGGAAAGATTGC-CTCAGTTCGGATTGTTCTCTGTACCTCGGGAACATGAAGTT 2534835 Query 448 GGAATCGCTAGTAATCGTAGATCAGCATG 476 |||||||||||||||||| |||||||||| Sbjct 2534834 GGAATCGCTAGTAATCGTGGATCAGCATG 2534806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503853420160