Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq3164 93.3 8e-17 seq133 93.3 8e-17 seq6 80.6 5e-13 >seq3164 Length=5754 Score = 93.3 bits (102), Expect = 8e-17 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 219 GGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAA 278 |||| ||||| | |||||||| | |||| | ||| |||||||||||||||||| |||| Sbjct 233 GGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAG 174 Query 279 TGATCCGGCGGTGCTGAATGGAACGG 304 ||||||| |||||| |||||||| || Sbjct 173 TGATCCGACGGTGCCGAATGGAATGG 148 >seq133 Length=227095 Score = 93.3 bits (102), Expect = 8e-17 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 219 GGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAA 278 |||| ||||| | |||||||| | |||| | ||| |||||||||||||||||| |||| Sbjct 78540 GGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAG 78481 Query 279 TGATCCGGCGGTGCTGAATGGAACGG 304 ||||||| |||||| |||||||| || Sbjct 78480 TGATCCGACGGTGCCGAATGGAATGG 78455 >seq6 Length=38054609 Score = 80.6 bits (88), Expect = 5e-13 Identities = 89/116 (77%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 214 GCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGG 273 |||||| || || || | ||||| | | |||| | || |||||||| ||||| ||| Sbjct 28056195 GCAAAGCCATAAAGGAGCTTGACCTC-ATACCCACCCGTTGAGCAGGGAAGAAAGGCGGA 28056253 Query 274 CTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTAC 329 |||| || || | ||||||||| ||||| ||||||||||| | |||||||| ||| Sbjct 28056254 CTTAGTGCTCTGACGGTGCTGAGTGGAAGGGCCGTCGCTC-AATGATAAAAGTTAC 28056308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982304255296