Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq5 168 1e-39 seq2 167 5e-39 seq108 159 7e-37 >seq5 Length=38841276 Score = 168 bits (186), Expect = 1e-39 Identities = 161/202 (80%), Gaps = 3/202 (1%) Strand=Plus/Plus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 ||||||| ||| || || |||| ||||||||||||| ||||||||||||| |||||| Sbjct 6702203 CCTTCTT-CACTCATGCAAAATTG-CTGGATCAGGCTTGTGCCCATTGTCCAAAATTCCC 6702260 Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 |||||||||| | | | |||||| || |||||||||||| || ||||| ||| || ||| Sbjct 6702261 CACTGCTGCC-CTCATGGGAGTCCGGGCCGTGTCTCAGTCCCGGTGTGGCTGGTCGTCCG 6702319 Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCG 196 |||||||||| | ||| ||| |||| | |||| |||||| |||||||| ||||| | Sbjct 6702320 AAAAGACCAGTTAAGCATCATCGGCTTGTTCAGCCTTTACCTAACCAACTACCTAATACT 6702379 Query 197 ACCTAGGCTCATCTGATAGCGC 218 || ||||||||| | ||||| Sbjct 6702380 ACGCAGGCTCATCAAACAGCGC 6702401 Score = 165 bits (182), Expect = 2e-38 Identities = 160/202 (79%), Gaps = 3/202 (1%) Strand=Plus/Plus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 ||||||| ||| || || |||| ||||||||||||| ||||||||||||| |||||| Sbjct 6687356 CCTTCTT-CACTCATGCAAAATTG-CTGGATCAGGCTTGAGCCCATTGTCCAAAATTCCC 6687413 Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 |||||||||| | | | |||||| || |||||||||||| || ||||| ||| || ||| Sbjct 6687414 CACTGCTGCC-CTCATGGGAGTCCGGGCCGTGTCTCAGTCCCGGTGTGGCTGGTCGTCCG 6687472 Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCG 196 ||||||| || | ||| ||| |||| | |||| |||||| |||||||| ||||| | Sbjct 6687473 AAAAGACCAGATAAGCATCATCGGCTTGATCAGCCTTTACCTAACCAACTACCTAATACT 6687532 Query 197 ACCTAGGCTCATCTGATAGCGC 218 || ||||||||| | ||||| Sbjct 6687533 ACGCAGGCTCATCAAACAGCGC 6687554 >seq2 Length=25468329 Score = 167 bits (184), Expect = 5e-39 Identities = 172/220 (78%), Gaps = 5/220 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||| | | ||| | ||||||| ||| ||||| |||| ||||||||||||| ||| Sbjct 11145962 CTTTACGAGCGGAATTGCCCTTCTT-CACTCACGCAATATTG-CTGGATCAGGCTTGCGC 11145905 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| | || |||||| || | |||||||||| || Sbjct 11145904 CCATTGTCCAAGATTCCCCACTGCTGCC-ACTGTGGGAGTCCGGGCTGTGTCTCAGTCCC 11145846 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||| |||||| ||| |||| || || | ||| ||| |||||| |||| |||||| Sbjct 11145845 GCTGTGGCTGATCGTCCGAAAAGACTAGCTAAGCATCATCGTCTTGGTCAGCCTTTACCT 11145786 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||| ||||| | ||||| Sbjct 11145785 AACCAACTATCTAATACTACGCAGGGTCATCAAACAGCGC 11145746 >seq108 Length=282357 Score = 159 bits (176), Expect = 7e-37 Identities = 110/123 (89%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 129778 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 129836 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 129837 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 129896 Query 149 ACG 151 ||| Sbjct 129897 ACG 129899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071895522880