Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202
016-09-23] 9,746 sequences; 954,861,368 total letters
Query= AAMG01001382.1
Length=124
Score E
Sequences producing significant alignments: (Bits) Value
seq5154 82.4 5e-14
seq1169 80.6 2e-13
seq1273 75.2 7e-12
seq2940 71.6 8e-11
seq2701 71.6 8e-11
seq2505 71.6 8e-11
seq1529 71.6 8e-11
seq1526 71.6 8e-11
seq1456 71.6 8e-11
seq1383 71.6 8e-11
seq986 71.6 8e-11
seq941 71.6 8e-11
seq881 71.6 8e-11
seq811 71.6 8e-11
seq808 71.6 8e-11
seq762 71.6 8e-11
seq722 71.6 8e-11
seq490 71.6 8e-11
seq420 71.6 8e-11
seq290 71.6 8e-11
seq203 71.6 8e-11
seq15 71.6 8e-11
seq4 71.6 8e-11
>seq5154
Length=2536
Score = 82.4 bits (90), Expect = 5e-14
Identities = 66/76 (87%), Gaps = 3/76 (4%)
Strand=Plus/Minus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||||| |||| || |||||||| ||||||||||| |||||||||||||||||||
Sbjct 937 CTCACTAAACCATCCGAT-CGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 880
Query 109 TAATACAACGCAAGCT 124
|||| |||||| ||||
Sbjct 879 TAAT-CAACGCGAGCT 865
>seq1169
Length=24383
Score = 80.6 bits (88), Expect = 2e-13
Identities = 57/63 (90%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||||| |||||| |
Sbjct 17463 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGA 17520
Query 122 GCT 124
|||
Sbjct 17521 GCT 17523
>seq1273
Length=21771
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 13132 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 13189
Query 122 GCT 124
|||
Sbjct 13190 GCT 13192
>seq2940
Length=6478
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | |||| |||||| |||||||||||||||||||||| | |||||| |
Sbjct 3692 TTCAATCGGTAGGA-GCGATGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 3635
Query 122 GCT 124
|||
Sbjct 3634 GCT 3632
>seq2701
Length=7409
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||| ||| | |||||| |
Sbjct 6436 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGAAGTAGT-CAACGCGA 6493
Query 122 GCT 124
|||
Sbjct 6494 GCT 6496
>seq2505
Length=8261
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| | ||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 922 TTCAATTGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 979
Query 122 GCT 124
|||
Sbjct 980 GCT 982
>seq1529
Length=17149
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| | ||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 14598 TTCAATTGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 14541
Query 122 GCT 124
|||
Sbjct 14540 GCT 14538
>seq1526
Length=17195
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| || ||||||| || ||||||||||||| |||||||||| |||||| |
Sbjct 9392 TTCAATCGGTAGGAA-CGACGGGTGGTGTGTACAAAGGGCTGGGACGTAAT-CAACGCGA 9449
Query 122 GCT 124
|||
Sbjct 9450 GCT 9452
>seq1456
Length=18379
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| || ||||||| || ||||||||||||| |||||||||| |||||| |
Sbjct 10609 TTCAATCGGTAGGAA-CGACGGGTGGTGTGTACAAAGGGCTGGGACGTAAT-CAACGCGA 10552
Query 122 GCT 124
|||
Sbjct 10551 GCT 10549
>seq1383
Length=19491
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| || ||||||| || ||||||||||||| |||||||||| |||||| |
Sbjct 10822 TTCAATCGGTAGGAA-CGACGGGTGGTGTGTACAAAGGGCTGGGACGTAAT-CAACGCGA 10765
Query 122 GCT 124
|||
Sbjct 10764 GCT 10762
>seq986
Length=31780
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| || ||||||| || ||||||||||||| |||||||||| |||||| |
Sbjct 15585 TTCAATCGGTAGGAA-CGACGGGTGGTGTGTACAAAGGGCTGGGACGTAAT-CAACGCGA 15528
Query 122 GCT 124
|||
Sbjct 15527 GCT 15525
>seq941
Length=34480
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | |||||||| || |||||||||||||||||||||| | |||||| |
Sbjct 12058 TTCAATCGGTAGGA-GCGACGGGTGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 12115
Query 122 GCT 124
|||
Sbjct 12116 GCT 12118
>seq881
Length=37911
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||| ||| | |||||| |
Sbjct 22943 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGAAGTAGT-CAACGCGA 23000
Query 122 GCT 124
|||
Sbjct 23001 GCT 23003
>seq811
Length=43247
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| || ||||||| || ||||||||||||| |||||||||| |||||| |
Sbjct 7778 TTCAATCGGTAGGAA-CGACGGGTGGTGTGTACAAAGGGCTGGGACGTAAT-CAACGCGA 7835
Query 122 GCT 124
|||
Sbjct 7836 GCT 7838
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| || ||||||| || ||||||||||||| |||||||||| |||||| |
Sbjct 16667 TTCAATCGGTAGGAA-CGACGGGTGGTGTGTACAAAGGGCTGGGACGTAAT-CAACGCGA 16610
Query 122 GCT 124
|||
Sbjct 16609 GCT 16607
>seq808
Length=43315
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| || ||||||| || ||||||||||||| |||||||||| |||||| |
Sbjct 11698 TTCAATCGGTAGGAA-CGACGGGTGGTGTGTACAAAGGGCTGGGACGTAAT-CAACGCGA 11641
Query 122 GCT 124
|||
Sbjct 11640 GCT 11638
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| || ||||||| || ||||||||||||| |||||||||| |||||| |
Sbjct 21682 TTCAATCGGTAGGAA-CGACGGGTGGTGTGTACAAAGGGCTGGGACGTAAT-CAACGCGA 21739
Query 122 GCT 124
|||
Sbjct 21740 GCT 21742
>seq762
Length=46487
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| || ||||||| || ||||||||||||| |||||||||| |||||| |
Sbjct 8566 TTCAATCGGTAGGAA-CGACGGGTGGTGTGTACAAAGGGCTGGGACGTAAT-CAACGCGA 8623
Query 122 GCT 124
|||
Sbjct 8624 GCT 8626
>seq722
Length=49293
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| || ||||||| || ||||||||||||| |||||||||| |||||| |
Sbjct 1517 TTCAATCGGTAGGAA-CGACGGGTGGTGTGTACAAAGGGCTGGGACGTAAT-CAACGCGA 1460
Query 122 GCT 124
|||
Sbjct 1459 GCT 1457
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| || ||||||| || ||||||||||||| |||||||||| |||||| |
Sbjct 40752 TTCAATCGGTAGGAA-CGACGGGTGGTGTGTACAAAGGGCTGGGACGTAAT-CAACGCGA 40695
Query 122 GCT 124
|||
Sbjct 40694 GCT 40692
>seq490
Length=77422
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| || ||| | |
Sbjct 6866 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTA-AACACGA 6809
Query 122 GCT 124
|||
Sbjct 6808 GCT 6806
>seq420
Length=95832
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| || ||||||| || ||||||||||||| |||||||||| |||||| |
Sbjct 51846 TTCAATCGGTAGGAA-CGACGGGTGGTGTGTACAAAGGGCTGGGACGTAAT-CAACGCGA 51789
Query 122 GCT 124
|||
Sbjct 51788 GCT 51786
>seq290
Length=129259
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| | ||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 118460 TTCAATTGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 118403
Query 122 GCT 124
|||
Sbjct 118402 GCT 118400
>seq203
Length=166709
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| || ||||||| || ||||||||||||| |||||||||| |||||| |
Sbjct 164887 TTCAATCGGTAGGAA-CGACGGGTGGTGTGTACAAAGGGCTGGGACGTAAT-CAACGCGA 164830
Query 122 GCT 124
|||
Sbjct 164829 GCT 164827
>seq15
Length=50573455
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||| ||| | |||||| |
Sbjct 17784788 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGAAGTAGT-CAACGCGA 17784731
Query 122 GCT 124
|||
Sbjct 17784730 GCT 17784728
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| || ||||||| || ||||||||||||| |||||||||| |||||| |
Sbjct 40387534 TTCAATCGGTAGGAA-CGACGGGTGGTGTGTACAAAGGGCTGGGACGTAAT-CAACGCGA 40387591
Query 122 GCT 124
|||
Sbjct 40387592 GCT 40387594
>seq4
Length=33175494
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| || ||||||| || ||||||||||||| |||||||||| |||||| |
Sbjct 30443887 TTCAATCGGTAGGAA-CGACGGGTGGTGTGTACAAAGGGCTGGGACGTAAT-CAACGCGA 30443830
Query 122 GCT 124
|||
Sbjct 30443829 GCT 30443827
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 300772516280
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |