Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq108 132 1e-28 seq5 105 1e-20 seq2 102 2e-19 >seq108 Length=282357 Score = 132 bits (146), Expect = 1e-28 Identities = 99/116 (85%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 129783 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 129842 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTAC 116 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| Sbjct 129843 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTAC 129898 >seq5 Length=38841276 Score = 105 bits (116), Expect = 1e-20 Identities = 116/153 (76%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||||| || |||||||| ||| || ||||||||||||| | | | |||||| Sbjct 6687378 GCTGGATCAGGCTTGAGCCCATTGTCCAAAATTCCCCACTGCTGCC-CTCATGGGAGTCC 6687436 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 |||||||||||||||||| |||||| | || || || || | || ||| |||| Sbjct 6687437 GGGCCGTGTCTCAGTCCCGGTGTGGCTGGTCGTCCGAAAAGACCAGATAAGCATCATCGG 6687496 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||| | || ||| || |||||||||||||| Sbjct 6687497 CTTGATCAGCCTTTACCTAACCAACTACCTAAT 6687529 Score = 105 bits (116), Expect = 1e-20 Identities = 116/153 (76%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||||| || |||||||| ||| || ||||||||||||| | | | |||||| Sbjct 6702225 GCTGGATCAGGCTTGTGCCCATTGTCCAAAATTCCCCACTGCTGCC-CTCATGGGAGTCC 6702283 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 |||||||||||||||||| |||||| | || || || || | || ||| |||| Sbjct 6702284 GGGCCGTGTCTCAGTCCCGGTGTGGCTGGTCGTCCGAAAAGACCAGTTAAGCATCATCGG 6702343 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||| | || ||| || |||||||||||||| Sbjct 6702344 CTTGTTCAGCCTTTACCTAACCAACTACCTAAT 6702376 >seq2 Length=25468329 Score = 102 bits (112), Expect = 2e-19 Identities = 115/153 (75%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||||| || | |||||||| ||| || ||||||||||||| | || |||||| Sbjct 11145922 GCTGGATCAGGCTTGCGCCCATTGTCCAAGATTCCCCACTGCTGCCACT-GTGGGAGTCC 11145864 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 |||| ||||||||||||| |||||| | || || || | |||| ||| ||| Sbjct 11145863 GGGCTGTGTCTCAGTCCCGCTGTGGCTGATCGTCCGAAAAGACTAGCTAAGCATCATCGT 11145804 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| || |||||||| ||||| Sbjct 11145803 CTTGGTCAGCCTTTACCTAACCAACTATCTAAT 11145771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998302695936