Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq677 82.4 2e-13 seq2 82.4 2e-13 seq13 77.0 8e-12 >seq677 Length=53605 Score = 82.4 bits (90), Expect = 2e-13 Identities = 128/176 (73%), Gaps = 8/176 (5%) Strand=Plus/Minus Query 210 CAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTG 269 || ||||||| || |||| || ||| | ||| |||| || | | || | ||||| Sbjct 53422 CATCTTCGGCAGACCGCTTA-GCTCCGTT-CATCTTCGGTGCAAGAGCGCTCAATCAGTG 53365 Query 270 AGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGC 329 | |||||| |||||||||||||| |||||||||| | || |||||| ||| ||||| || Sbjct 53364 AACTATTATGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCATGGCTGTCTCTGC 53305 Query 330 AACTCCACATC-CTTT-CCCACTG--AGTCACCACTTAGGGGCCTTAGCTGATGAT 381 | | || || |||| |||||| |||| |||||||| |||||| |||| Sbjct 53304 ACACCTACCTCGCTTTATCCACTGGCGGTCA--TGTTAGGGGCTGTAGCTGGTGAT 53251 >seq2 Length=25468329 Score = 82.4 bits (90), Expect = 2e-13 Identities = 82/105 (78%), Gaps = 6/105 (6%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || | || ||||| | |||||| |||| || ||| || ||||||| Sbjct 9973975 GCTTCGGTGAATCATTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 9973919 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACC 313 ||||||||||| |||| ||||||||||||||||||||| ||| Sbjct 9973918 GAGCTATTACGTTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACC 9973874 >seq13 Length=83567108 Score = 77.0 bits (84), Expect = 8e-12 Identities = 88/116 (76%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 210 CAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTG 269 || ||||||| || |||| || ||| | ||| |||| || | | || | ||||| Sbjct 19812193 CATCTTCGGCAGACCGCTTA-GCTCCGTT-CATCTTCGGTGCAAGAGCGCTCAATCAGTG 19812250 Query 270 AGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 | |||||| |||||||||||||| |||||||||| | || |||||| ||| ||||| Sbjct 19812251 AACTATTATGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCATGGCTGTCT 19812306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177485231104