Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq15 89.7 9e-16 seq5 89.7 9e-16 >seq15 Length=50573455 Score = 89.7 bits (98), Expect = 9e-16 Identities = 184/271 (68%), Gaps = 6/271 (2%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | ||| || || || | |||||||| | Sbjct 13186987 GCTTTCGTCTCTCAGTGTCAGTATCGGCCCAACAGAGTGCTTTTATCGTTGGTGTTCTTT 13187046 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || | |||||||||||||| | ||| | |||| ||||||| | | ||||||| Sbjct 13187047 CCGATCTATACGCATTTCACCGTTCCACCAGAAATTTTCTCTGCCTCTACCGTACTCAAG 13187106 Query 126 AAAAACAGTTTCAAATG-CAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCC 184 |||||| | || | | | || |||||||||| || ||| || | || || Sbjct 13187107 CTTGGTAGTTTCCACTGCCTGTCCAT-GGTTGAGCCCTGAGATTTGACGGCGGATTTAAA 13187165 Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATC----CGGATAACGCTTGCCACCTACG 240 || |||||| | |||||||||||| |||| | || ||| ||||| | | | Sbjct 13187166 AAGCCACCTACAGACGTTTTACACCCAATCAATCATTTCAGAAAACACTTGCATCTTCTG 13187225 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCC 271 ||||||| | ||||| ||||| ||||||||| Sbjct 13187226 TATTACCACAGCTGCCGGCACATAGTTAGCC 13187256 >seq5 Length=38841276 Score = 89.7 bits (98), Expect = 9e-16 Identities = 193/288 (67%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| | ||||||| || |||| | | |||||||| ||| || Sbjct 6701868 CCCAAGCTTTCGCACACCAGCGTCGGTAGAGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 6701927 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| ||| |||||||| || |||||| |||||| | ||||| ||| Sbjct 6701928 TCCTTCGTAGATCCGTAGATTTCACCCCTCCACACGAAATTCCACTCTCCTCTGTCTCAC 6701987 Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCATAGTTTTCACATCTG 177 ||||| | ||||| || ||| || | |||| | |||||| | Sbjct 6701988 TCAAGTTCAGTGGTTTCGAAAGCATTCCGCCACTTTTTGACGAC-----TTTCACTTTCA 6702042 Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237 || | ||| |||| | ||||||| || | | | |||| | ||| |||||| || Sbjct 6702043 ACCCGATGAACCGTCTACGTGTCCTTTACGCCTAGTCATTCCGAAGAACACTTGCCCCCC 6702102 Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 | | |||||||||||||||||| | ||||| ||| ||||| |||||| Sbjct 6702103 CCATTTTACCGCGGCTGCTGGCAGGGAGTTATCCGGGGCTTCTTCCTC 6702150 Score = 80.6 bits (88), Expect = 4e-13 Identities = 191/288 (66%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| | ||||||| || |||| | | |||||| | ||| | Sbjct 6687021 CCCAAGCTTTCGCACACCAGCGTCGGTAGAGACCCAGAGAGCTGCCTTCACTTTTGGCAT 6687080 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| ||| |||||||| || |||||| |||||| | ||||| ||| Sbjct 6687081 TCCTTCGTAGATCCGTAGATTTCACCCCTCCACACGAAATTCCACTCTCCTCTGTCTCAC 6687140 Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCATAGTTTTCACATCTG 177 ||||| | ||||| || ||| || | |||| | |||||| | Sbjct 6687141 TCAAGTTCAGTGGTTTCGAAAGCATTCCGCCACTTTTTGACGAC-----TTTCACTTTCA 6687195 Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237 || | ||| |||| | ||||||| || | | | |||| | ||| |||||| || Sbjct 6687196 ACCCGATGAACCGTCTACGTGTCCTTTACGCCTAGTCATTCCGAAGAACACTTGCCCCCC 6687255 Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 | | |||||||||||||||||| | ||||| ||| ||||| |||||| Sbjct 6687256 CCATTTTACCGCGGCTGCTGGCAGGGAGTTATCCGGGGCTTCTTCCTC 6687303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828721749366