Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq108 167 6e-39 seq2 143 7e-32 seq5 141 2e-31 >seq108 Length=282357 Score = 167 bits (184), Expect = 6e-39 Identities = 109/120 (91%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90 |||||||||| ||| | |||||||| ||||||||| | || ||||||||||||||||||| Sbjct 129778 CACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCC 129837 Query 91 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 ||||||||||||| |||||||||||| |||||||||||| |||||||||| ||||||||| Sbjct 129838 CGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTA 129897 >seq2 Length=25468329 Score = 143 bits (158), Expect = 7e-32 Identities = 149/193 (77%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||| | | ||| | ||||||||| ||||| || |||| ||||||||||||||| Sbjct 11145962 CTTTACGAGCGGAATTGCCCTTCTTCACTCACGCAATATTGCTGGATCAGGCTTGCGCCC 11145903 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| | || |||||| || | |||||||||| || Sbjct 11145902 ATTGTCCAAGATTCCCCACTGCTGCC-ACTGTGGGAGTCCGGGCTGTGTCTCAGTCCCGC 11145844 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| || ||| |||| ||||| | ||| ||| || ||| ||| ||||| Sbjct 11145843 TGTGGCTGATCGTCCGAAAAGACTAGCTAAGCATCATCGTCTTGGTCAGCCTTTACCTAA 11145784 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 11145783 CCAACTATCTAAT 11145771 >seq5 Length=38841276 Score = 141 bits (156), Expect = 2e-31 Identities = 137/175 (78%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 ||||||||| || || || |||| |||||||||| ||||||||| ||| |||||||| Sbjct 6687356 CCTTCTTCACTCATGCAAAATTGCTGGATCAGGCTTGAGCCCATTGTCCAAAATTCCCCA 6687415 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 |||||||| | | | |||||| || |||||||||||| || |||||||||||| ||| Sbjct 6687416 CTGCTGCC-CTCATGGGAGTCCGGGCCGTGTCTCAGTCCCGGTGTGGCTGGTCGTCCGAA 6687474 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194 ||||||| || | ||| ||| || | | ||| ||||| ||||||| ||||| Sbjct 6687475 AAGACCAGATAAGCATCATCGGCTTGATCAGCCTTTACCTAACCAACTACCTAAT 6687529 Score = 141 bits (156), Expect = 2e-31 Identities = 137/175 (78%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 ||||||||| || || || |||| |||||||||| ||||||||| ||| |||||||| Sbjct 6702203 CCTTCTTCACTCATGCAAAATTGCTGGATCAGGCTTGTGCCCATTGTCCAAAATTCCCCA 6702262 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 |||||||| | | | |||||| || |||||||||||| || |||||||||||| ||| Sbjct 6702263 CTGCTGCC-CTCATGGGAGTCCGGGCCGTGTCTCAGTCCCGGTGTGGCTGGTCGTCCGAA 6702321 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194 ||||||| || | ||| ||| || | | ||| ||||| ||||||| ||||| Sbjct 6702322 AAGACCAGTTAAGCATCATCGGCTTGTTCAGCCTTTACCTAACCAACTACCTAAT 6702376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222280864896