Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq5 201 3e-49 seq108 141 3e-31 seq2 140 1e-30 >seq5 Length=38841276 Score = 201 bits (222), Expect = 3e-49 Identities = 244/328 (74%), Gaps = 6/328 (2%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| | |||| ||| ||| || | | || || Sbjct 6702376 ATTAGGTAGTTGGTTAGGTAAAGGCTGAACAAGCCGATGATGCTTAACTGGTCTTTTCGG 6702317 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 || | |||||| || |||||||||||| || ||||| | | | ||||||||||||| Sbjct 6702316 ACGACCAGCCACACCGGGACTGAGACACGGCCCGGACTCCCATGAG-GGCAGCAGTGGGG 6702258 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| |||||||||| ||||||||| |||||| || |||| || ||||| | | Sbjct 6702257 AATTTTGGACAATGGGCACAAGCCTGATCCAGCAATTTTGCATGAGTGAAGAAGGGCAAT 6702198 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGAAGCCC 403 | ||||||| |||| || || || | || ||||| ||| ||||| ||||||| Sbjct 6702197 TTCACTCGTAAATCTCTTTCGTCGAGTGCGCGATCATGACATGACTCGAGGAAGAAGCCC 6702138 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||| ||||| | |||||||||||||||||| | | |||||| || ||| | |||||| | Sbjct 6702137 CGGATAACTCCCTGCCAGCAGCCGCGGTAAAATGGGGGGGGCAAGTGTTCTTCGGAATGA 6702078 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGTT 491 || |||||||||| ||||| |||| Sbjct 6702077 CT-AGGCGTAAAGGACACGTAGACGGTT 6702051 Score = 196 bits (216), Expect = 1e-47 Identities = 243/328 (74%), Gaps = 6/328 (2%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| | |||| ||| ||| || | | || || Sbjct 6687529 ATTAGGTAGTTGGTTAGGTAAAGGCTGATCAAGCCGATGATGCTTATCTGGTCTTTTCGG 6687470 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 || | |||||| || |||||||||||| || ||||| | | | ||||||||||||| Sbjct 6687469 ACGACCAGCCACACCGGGACTGAGACACGGCCCGGACTCCCATGAG-GGCAGCAGTGGGG 6687411 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| ||||||||| |||||| || |||| || ||||| | | Sbjct 6687410 AATTTTGGACAATGGGCTCAAGCCTGATCCAGCAATTTTGCATGAGTGAAGAAGGGCAAT 6687351 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGAAGCCC 403 | ||||||| |||| || || || | || ||||| ||| ||||| ||||||| Sbjct 6687350 TTCACTCGTAAATCTCTTTCGTCGAGTGCGCGATCATGACATGACTCGAGGAAGAAGCCC 6687291 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||| ||||| | |||||||||||||||||| | | |||||| || ||| | |||||| | Sbjct 6687290 CGGATAACTCCCTGCCAGCAGCCGCGGTAAAATGGGGGGGGCAAGTGTTCTTCGGAATGA 6687231 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGTT 491 || |||||||||| ||||| |||| Sbjct 6687230 CT-AGGCGTAAAGGACACGTAGACGGTT 6687204 >seq108 Length=282357 Score = 141 bits (156), Expect = 3e-31 Identities = 104/121 (86%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 211 GTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTAC 270 ||||| | | |||||| ||||| |||||| ||| |||||||||||| ||| |||||||| Sbjct 129898 GTAGCTGGTCCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTAC 129839 Query 271 GGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGT 330 |||||||||||||||||||| || | |||||||| ||||||||| | ||||| ||||||| Sbjct 129838 GGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGT 129779 Query 331 G 331 | Sbjct 129778 G 129778 >seq2 Length=25468329 Score = 140 bits (154), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 156 GACCC-GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAG 214 ||||| |||| ||||| |||||||| |||||| |||| |||||| ||| ||| ||| Sbjct 11145758 GACCCTGCGTAGTATTAGATAGTTGGTTAGGTAAAGGCTGACCAAGACGATGATGCTTAG 11145817 Query 215 CCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGA 274 | || || |||| |||||| || |||||||||| | || ||||| || | Sbjct 11145818 CTAGTCTTTTCGGACGATCAGCCACAGCGGGACTGAGACACAGCCCGGACTCCCACAGT- 11145876 Query 275 GGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGC 334 |||||||||||||||| ||| ||||||||| ||||||||| |||||| ||||||| Sbjct 11145877 GGCAGCAGTGGGGAATCTTGGACAATGGGCGCAAGCCTGATCCAGCAATATTGCGTGAGT 11145936 Query 335 GATGAAGGCC--TTCGGGTCGTAAAGCTCT 362 || ||||| | ||| | |||||||||||| Sbjct 11145937 GAAGAAGGGCAATTCCGCTCGTAAAGCTCT 11145966 Score = 89.7 bits (98), Expect = 2e-15 Identities = 97/126 (77%), Gaps = 7/126 (6%) Strand=Plus/Minus Query 355 AAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACT 412 |||||||| || || || | || ||||| ||| ||||| |||||||||||||||| Sbjct 9974237 AAAGCTCTTTCGTCGAGTGCGCAATCATGACATGACTCGAGGAAGAAGCCCCGGCTAACT 9974178 Query 413 ACGTGCCAGCAGCCGCGGTAATAC----GTAGGGGGCTAGCGTTATCCGGAATTACTGGG 468 ||| |||||||||||||||| || | ||||||| || ||| | |||||| ||| | Sbjct 9974177 CCGTACCAGCAGCCGCGGTAAAACGGGAGGAGGGGGCAAGTGTTCTTCGGAATGACT-AG 9974119 Query 469 GCGTAA 474 |||||| Sbjct 9974118 GCGTAA 9974113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497454043904