Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq5 183 7e-44 seq257 154 4e-35 seq15 123 6e-26 seq2 91.5 4e-16 >seq5 Length=38841276 Score = 183 bits (202), Expect = 7e-44 Identities = 246/338 (73%), Gaps = 6/338 (2%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||| ||||| | |||||||||||||||||| | | |||||| Sbjct 6702154 ACTCGAGGAAGAAGCCCCGGATAACTCCCTGCCAGCAGCCGCGGTAAAATGGGGGGGGCA 6702095 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||| |||||||||| ||||| |||| | || | ||| Sbjct 6702094 AGTGTTCTTCGGAATGACTAGGCGTAAAGGACACGTAGACGGTTCATCGGGTTGAAAGTG 6702035 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 |||| | | | || | ||| |||||| ||||| | | || ||||| || Sbjct 6702034 AAAGTC---GTCAAAAAGTGGCGGAATGCTTTCGAAACCACTGAACTTGAGTGAGACAGA 6701978 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 || ||||||||| | ||| || |||||||| ||| | | |||||| ||| | Sbjct 6701977 GGAGAGTGGAATTTCGTGTGGAGGGGTGAAATCTACGGATCTACGAAGGAACGCCAAAAG 6701918 Query 241 CGAAGGCGGCTTGCTGGA-CTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299 ||||||| ||| |||| || || | ||| ||| | ||||||| |||||||| ||| Sbjct 6701917 CGAAGGCAGCTCTCTGGGTCTCTACC-GACGCTGGTGTGCGAAAGCTTGGGGAGCGAACG 6701859 Query 300 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 |||||||||||||||||||||| |||||||||||||| Sbjct 6701858 GGATTAGATACCCTGGTAGTCCGTGCCGTAAACGATGA 6701821 Score = 174 bits (192), Expect = 4e-41 Identities = 244/338 (72%), Gaps = 6/338 (2%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||| ||||| | |||||||||||||||||| | | |||||| Sbjct 6687307 ACTCGAGGAAGAAGCCCCGGATAACTCCCTGCCAGCAGCCGCGGTAAAATGGGGGGGGCA 6687248 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||| |||||||||| ||||| |||| | || | ||| Sbjct 6687247 AGTGTTCTTCGGAATGACTAGGCGTAAAGGACACGTAGACGGTTCATCGGGTTGAAAGTG 6687188 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 |||| | | | || | ||| |||||| ||||| | | || ||||| || Sbjct 6687187 AAAGTC---GTCAAAAAGTGGCGGAATGCTTTCGAAACCACTGAACTTGAGTGAGACAGA 6687131 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 || ||||||||| | ||| || |||||||| ||| | | ||||| ||| | Sbjct 6687130 GGAGAGTGGAATTTCGTGTGGAGGGGTGAAATCTACGGATCTACGAAGGAATGCCAAAAG 6687071 Query 241 CGAAGGCGGCTTGCTGGA-CTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299 |||||| ||| |||| || || | ||| ||| | ||||||| |||||||| ||| Sbjct 6687070 TGAAGGCAGCTCTCTGGGTCTCTACC-GACGCTGGTGTGCGAAAGCTTGGGGAGCGAACG 6687012 Query 300 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 |||||||||||||||||||||| |||||||||||||| Sbjct 6687011 GGATTAGATACCCTGGTAGTCCGTGCCGTAAACGATGA 6686974 >seq257 Length=139883 Score = 154 bits (170), Expect = 4e-35 Identities = 169/222 (76%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 188 GGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGC 247 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| || Sbjct 23916 GGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGC 23975 Query 248 GGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGA 307 |||||| | | |||||||||||| ||||||| ||||||| || |||||||| Sbjct 23976 ACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGA 24035 Query 308 TACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTGCTC 366 ||||| ||||||| ||||||||||||| |||||||| | | | ||| || | | Sbjct 24036 TACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCCGTG 24094 Query 367 CGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 24095 CAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 24136 Score = 107 bits (118), Expect = 5e-21 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 188 GGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGC 247 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| || Sbjct 17236 GGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGC 17295 Query 248 GGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGA 307 |||||| | | |||||||||||| ||||||| ||||||| || |||||||| Sbjct 17296 ACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGA 17355 Query 308 TACCCTGGTAGTCC 321 ||||| ||||||| Sbjct 17356 TACCCCAGTAGTCC 17369 Score = 100 bits (110), Expect = 7e-19 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 188 GGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGC 247 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| || Sbjct 9482 GGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGC 9541 Query 248 GGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGA 307 |||||| | | |||||||||||| ||||||| ||||||| || |||||||| Sbjct 9542 ACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGA 9601 Query 308 TACCC 312 ||||| Sbjct 9602 TACCC 9606 >seq15 Length=50573455 Score = 123 bits (136), Expect = 6e-26 Identities = 216/314 (69%), Gaps = 4/314 (1%) Strand=Plus/Minus Query 20 GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTAC 79 ||||||||| ||||| ||||| | |||||||| | | || || ||| || | ||| | Sbjct 13187256 GGCTAACTATGTGCCGGCAGCTGTGGTAATACAGAAGATGCAAGTGTTTTCTGAAATGAT 13187197 Query 80 TG----GGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTC 135 || || ||||| || |||||||| || |||| || | || ||| | ||||| Sbjct 13187196 TGATTGGGTGTAAAACGTCTGTAGGTGGCTTTTTAAATCCGCCGTCAAATCTCAGGGCTC 13187137 Query 136 AACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCC 195 |||| || || | |||||| | ||| |||| | | || |||| |||| | Sbjct 13187136 AACCATGGACAGGCAGTGGAAACTACCAAGCTTGAGTACGGTAGAGGCAGAGAAAATTTC 13187077 Query 196 TAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCT 255 | ||| | |||||||||||||| | || | | |||||||| | || || || | Sbjct 13187076 TGGTGGAACGGTGAAATGCGTATAGATCGGAAAGAACACCAACGATAAAAGCACTCTGTT 13187017 Query 256 GGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGG 315 || | | |||||||||||| ||||||| |||||||| |||||||||||||| Sbjct 13187016 GGGCCGATACTGACACTGAGAGACGAAAGCTAAAGGAGCAAATAGGATTAGATACCCCAC 13186957 Query 316 TAGTCCACGCCGTA 329 |||||| |||||| Sbjct 13186956 TAGTCCTAGCCGTA 13186943 >seq2 Length=25468329 Score = 91.5 bits (100), Expect = 4e-16 Identities = 75/91 (82%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC----GTAGGG 57 ||| ||||| |||||||||||||||| ||| |||||||||||||||| || | |||| Sbjct 9974203 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTACCAGCAGCCGCGGTAAAACGGGAGGAGGG 9974144 Query 58 GGCTAGCGTTATCCGGAATTACTGGGCGTAA 88 ||| || ||| | |||||| ||| ||||||| Sbjct 9974143 GGCAAGTGTTCTTCGGAATGACTAGGCGTAA 9974113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203082736128