Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq108 98.7 2e-18 seq5 77.0 7e-12 >seq108 Length=282357 Score = 98.7 bits (108), Expect = 2e-18 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 112 CCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGC 171 ||| ||||| | | ||| |||| || ||| |||||| || ||||| ||||||||| Sbjct 129774 CCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGC 129833 Query 172 CTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 ||||||||||||| ||| |||||||||||| ||| ||||| || | ||||||| || Sbjct 129834 CTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGA 129890 >seq5 Length=38841276 Score = 77.0 bits (84), Expect = 7e-12 Identities = 137/199 (69%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || ||| || | | ||||| |||| || | |||||| |||| ||||| || Sbjct 6687356 CCTTCTTCACTCATGCAAAATTGCTGGATCAGGCTTGAGCCCATTGTCCAAAATTCCCCA 6687415 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| | | | ||||| || |||||||||||| || ||||| | | ||| Sbjct 6687416 CTGCTGCC-CTCATGGGAGTCCGGGCCGTGTCTCAGTCCCGGTGTGGCTGGTCGTCCGAA 6687474 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | || |||| | |||| | | ||| ||||| || |||||||||| || Sbjct 6687475 AAGACCAGATAAGCATCATCGGCTTGATCAGCCTTTACCTAACCAACTACCTAATACTAC 6687534 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 6687535 GCAGGCTCATCAAACAGCG 6687553 Score = 77.0 bits (84), Expect = 7e-12 Identities = 137/199 (69%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || ||| || | | ||||| |||| || | |||||| |||| ||||| || Sbjct 6702203 CCTTCTTCACTCATGCAAAATTGCTGGATCAGGCTTGTGCCCATTGTCCAAAATTCCCCA 6702262 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| | | | ||||| || |||||||||||| || ||||| | | ||| Sbjct 6702263 CTGCTGCC-CTCATGGGAGTCCGGGCCGTGTCTCAGTCCCGGTGTGGCTGGTCGTCCGAA 6702321 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | || |||| | |||| | | ||| ||||| || |||||||||| || Sbjct 6702322 AAGACCAGTTAAGCATCATCGGCTTGTTCAGCCTTTACCTAACCAACTACCTAATACTAC 6702381 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 6702382 GCAGGCTCATCAAACAGCG 6702400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068695834752