Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6 190 2e-43 seq2 167 2e-36 seq16 163 2e-35 seq18 154 1e-32 >seq6 Length=38054609 Score = 190 bits (210), Expect = 2e-43 Identities = 575/874 (66%), Gaps = 18/874 (2%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| | || | | || ||| |||||||| ||||| || || || |||| Sbjct 29819584 TGTTCCCGATCCACTACCCGCAGATCTGGGAGATGTACAAGAAGGCCGAGGCCTCTTTCT 29819643 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTT-ATCGAGC 61182 |||| | || || |||||| | ||| |||||| ||||||||| | | | ||| | Sbjct 29819644 GGACCGCCGAAGAAGTCGATCTCTCCCAAGACACTCGCGACTGGGAGAATCTCAACGA-C 29819702 Query 61183 GGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTC 61242 || || | || ||||| ||||| || | || ||||| ||||| || ||||| ||||| Sbjct 29819703 GGAGAGCGCCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCATCCGACGGAATCGTT 29819762 Query 61243 AATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 |||||| | || ||| | || |||||||| || ||||||||| ||| Sbjct 29819763 TTAGAGAATCTCGCCTCCCGGTTCATGTCCGACGTGCAAGTCTCCGAGGCGCGTGCCTTC 29819822 Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362 ||||| |||||||| || || |||||| ||||||| ||||||||||| | || |||| Sbjct 29819823 TACGGGTTCCAGATCGCGATTGAGAATATCCACTCAGAGATGTACAGCCTCCTGCTCGAC 29819882 Query 61363 ACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACC- 61421 |||||||||| ||| || | || | | ||| || || || || ||||| Sbjct 29819883 ACGTACATCAAGGATAATAAAGAGAGGGACCACCTCTTCCGCGCGATTGAAACCATACCT 29819942 Query 61422 GGCG--GTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA 61479 ||| | ||| ||| || | |||||| | | |||||| | | | | || Sbjct 29819943 TGCGTCGCGAA---GAAGGCCCAATGGGCCATGACGTGGATCGACGG---ATCTCAGACT 29819996 Query 61480 TTTGGTGA-ACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTT 61538 || | || | ||| | |||| ||||| || || || | || ||| ||| || Sbjct 29819997 TTCGCCGAGAGGATCG-TGGCGTTTGCTTGCGTGGAAGGGATCTTCTTCTCCGGAAGCTT 29820055 Query 61539 TGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGA 61598 | | ||||| ||| ||||||| || || || ||||| || | |||||| ||| || Sbjct 29820056 CTGCTCGATCTTCTGGCTGAAGAAGCGAGGGCTCATGCCTGGGTTAACCTTCTCCAACGA 29820115 Query 61599 GTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTA 61658 |||||| || || ||||| ||| | || || || || || || || | || ||| Sbjct 29820116 GTTGATCTCTCGAGACGAAGGCCTTCACTGCGACTTCGCGTGCCTG--ATCTATACTCTA 29820173 Query 61659 TCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTAT 61718 | || || | |||||||||| ||| ||||||| | || ||||| || Sbjct 29820174 T-TGAGGACGAAGCTCACGGAGGAGCGCGTGAAGTCGATTGTTTGCGACGCGGTGGAGAT 29820232 Query 61719 CGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACT 61778 ||| ||| ||| || ||||| | || | | | | || |||||| ||| || Sbjct 29820233 CGAGAGGGAGTTTGTGTGCGACGCGCTTCCGTGCGCGTTGGTGGGGATGAATCGTGATCT 29820292 Query 61779 AATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAAGC 61837 ||| ||||||||||| ||||| || || | || |||| || ||||||| | | Sbjct 29820293 GATGAGTCAGTATATTGAGTTTGTGGCGGATAGGCTTTTGGGCGCGCTTGGGTACG-GGA 29820351 Query 61838 GGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGA 61897 | | || | | || || ||||||| ||||| |||||||||| | || || | Sbjct 29820352 AGGTGTACGGTGTGGCGAATCCGTTTGATTGGATGGAGTTGATTTCGCTTCAGGGGAAAA 29820411 Query 61898 CGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 |||| || |||||||| | || || || || || Sbjct 29820412 CGAACTTCTTCGAGAAGAGAGTTGGGGATTACCA 29820445 >seq2 Length=25468329 Score = 167 bits (184), Expect = 2e-36 Identities = 553/846 (65%), Gaps = 23/846 (3%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| ||||||||||| | ||||| ||||| | ||| ||||| Sbjct 22244263 ATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTCTCCCAAGAC 22244204 Query 61156 ATGAATGACTGGGAGCGT----TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTT 61211 | ||||||||| | | ||| ||| || | || ||||| ||||| || | Sbjct 22244203 ACCCGCGACTGGGAGACCAACCTCAACGA-CGGCGAGCGCCACTTCATCAAACACGTCCT 22244145 Query 61212 GGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCA 61271 || ||||| ||||| || ||||| |||||| |||||| | || ||| | Sbjct 22244144 CGCCTTCTTCGCCGCCTCCGACGGAATCGTCCTCGAGAATCTCGCCTCCCGGTTCATGTC 22244085 Query 61272 GGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331 || ||||| || || ||||||||| |||||||| |||||||| || || |||||| | Sbjct 22244084 CGACGTGCAGGTCTCCGAGGCGCGTGCCTTCTACGGGTTCCAGATCGCGATTGAGAATAT 22244025 Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGA 61391 |||||||||||||||||| | | | ||||||||||||| ||| ||| | || Sbjct 22244024 CCACTCGGAGATGTACAGCCTCTTGCTAGATACGTACATCAAGGACAACAAGGAGAGGGA 22243965 Query 61392 ACGATTGTTCAATGCCATCGAGACGATACC-GGCG--GTGAAGCGGAAAGCGGATTGGGC 61448 | | ||| || || ||||| || || ||| | ||| ||| || | ||||| Sbjct 22243964 CCATCTCTTCCGCGCGATTGAGACCATCCCTTGCGTCGCGAA---GAAGGCCCAATGGGC 22243908 Query 61449 CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGA-ACGATTGCTGGCATTTGCGG 61507 ||| || |||||| | | | | || || | || | ||| | |||| || ||| Sbjct 22243907 CTTGAAGTGGATCGACGG---ATCTCAGACTTTCGCCGAGAGGATCG-TGGCCTTCGCGT 22243852 Query 61508 TGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTG 61567 || || || | || ||| ||| || | | ||||| ||| | ||||| || | Sbjct 22243851 GCGTGGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGAG 22243792 Query 61568 GACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATT 61627 | || ||||| || || |||||| ||| ||| |||| || || ||||| ||| | || | Sbjct 22243791 GGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCGCGGGACGAAGGCCTTCACT 22243732 Query 61628 GTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTG 61687 | || || || | || || | || || || | ||||||||||| | Sbjct 22243731 GCGACTTCGC---GTGCCTGATCTATACCTTGTTGAGGACGAAGCTATCGGAGGAGCGCG 22243675 Query 61688 TGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGC 61747 || ||| || | || ||||| ||||| ||| ||| || ||||| | | Sbjct 22243674 TGAAGTCGATCGTGTGCGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTC 22243615 Query 61748 CCGTCTCACTCATCGGCATGAATTGTGGAC-TAATGTCGCAGTATATTGAATTTGTTGCC 61806 || | | | | || ||||| | |||| | ||| ||||||||||| ||||| || Sbjct 22243614 CCTGCGCGTTGGTGGGGATGAACCG-GGACTTGATGAGTCAGTATATTGAGTTTGTGGCG 22243556 Query 61807 GACCGTCTGTT-GGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGA 61865 || | || || ||| ||||||| | | | | || | | || || ||||| Sbjct 22243555 GATAGGCTTTTGGGTGCGCTTGGGTACG-GGAAGGTGTACGGTGTGGCGAATCCGTTTGA 22243497 Query 61866 TTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGA 61925 || ||||| |||| ||||| | || || |||||||| |||||||| | || || || Sbjct 22243496 TTGGATGGAGTTGATCTCGCTTCAGGGTAAAACGAATTTCTTCGAGAAGAGGGTTGGTGA 22243437 Query 61926 CTATCA 61931 || || Sbjct 22243436 TTACCA 22243431 >seq16 Length=18736220 Score = 163 bits (180), Expect = 2e-35 Identities = 553/846 (65%), Gaps = 23/846 (3%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| ||||||||||| | ||||| ||||| | ||| ||||| Sbjct 836410 ATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTCTCCCAAGAC 836469 Query 61156 ATGAATGACTGGGAGCGT----TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTT 61211 ||||||||| | | ||| ||| || | || ||| | ||||| || | Sbjct 836470 CCCCGCGACTGGGAGGAAAATCTCAACGA-CGGAGAGCGCCACTTCGTCAAACACGTCCT 836528 Query 61212 GGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCA 61271 || ||||| ||||| || ||||| |||||| ||||| | |||||| | Sbjct 836529 CGCCTTCTTCGCCGCATCCGACGGGATCGTCCTCGAGAACCTCGCCTCTCGTTTCATGTC 836588 Query 61272 GGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331 || || || || || ||||| || |||||||| |||||||| || || ||||| | Sbjct 836589 CGACGTCCAGGTCTCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCGATCGAGAACAT 836648 Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGA 61391 |||||| |||||||||||| | || | ||||| ||||||| ||| || | || Sbjct 836649 CCACTCCGAGATGTACAGTCTCCTGTTAGATACTTACATCAAGGATAATAGAGAGAGGGA 836708 Query 61392 ACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCG--GAAAGCGGATTGGGCC 61449 | | ||| || ||||||||||| || | | | ||| ||| || | |||||| Sbjct 836709 CCATCTCTTCCGCGCGATCGAGACGATCCC--CTGCGTCGCGAAGAAGGCCCAATGGGCC 836766 Query 61450 TTCAATTGGATCACCAGTACAACGGCTACATTTGGTGA-ACGATTGCTGGCATTTGCGGT 61508 | | |||||| | | || || | |||| || | ||| | |||| ||||| Sbjct 836767 ATGACGTGGATCGACGGATCACAGG---CCTTTGCCGAGAGGATCG-TGGCGTTTGCTTG 836822 Query 61509 GGTCGAGGGTGTATTTTTC-AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTG 61567 || || || | || ||| | ||| | | || | | ||||| ||| | ||||| |||| Sbjct 836823 CGTGGAAGGGATCTTCTTCTCGGGGAGCTTCTG-CTCGATCTTCTGGCTCAAGAAGCGTG 836881 Query 61568 GACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATT 61627 | || ||||| || || |||||| ||| ||| |||| || | ||||| ||| |||| | Sbjct 836882 GGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCGAGAGACGAAGGCCTGCACT 836941 Query 61628 GTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTG 61687 | || || || | || || | | ||| || | ||||||||||| | Sbjct 836942 GCGACTTCGC---GTGCCTGATCTACTCCCTCCTGAGGACGAAGCTCTCGGAGGAGCGCG 836998 Query 61688 TGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGC 61747 || | ||| || | || ||||| ||||| ||| ||| || ||||| | | Sbjct 836999 TGAGGTCGATCGTGTGCGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCT-C 837057 Query 61748 CCGT-CTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCC 61806 |||| | | | | || ||||| ||| ||| ||| ||||||||||| ||||| || Sbjct 837058 CCGTGCGCGTTGGTGGGGATGAACAGTGAACTGATGAGTCAGTATATTGAGTTTGTGGCG 837117 Query 61807 GACCGTCTGTTGGTCG-ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGA 61865 || | |||||| | ||||||| | | | | || | | || || ||||| Sbjct 837118 GATAGGTTGTTGGGAGCGCTTGGGTACG-GGAAGGTGTACGGTGTGGCGAATCCGTTTGA 837176 Query 61866 TTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGA 61925 || ||||| |||| ||||| | || || ||||| || |||||||| | || || || Sbjct 837177 TTGGATGGAGTTGATCTCGCTTCAGGGTAAAACGAACTTCTTCGAGAAGAGGGTTGGTGA 837236 Query 61926 CTATCA 61931 || || Sbjct 837237 TTACCA 837242 >seq18 Length=77673080 Score = 154 bits (170), Expect = 1e-32 Identities = 389/580 (67%), Gaps = 15/580 (3%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| | || | | || ||| |||||||| ||||| || || ||||||| Sbjct 68188856 TGTTCCCAATCCAATACCCGCAGATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCT 68188797 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTT-ATCGAGC 61182 |||| | ||||| ||||| | ||| | |||| ||||||||| | | | ||| | Sbjct 68188796 GGACCGCCGAGGAAGTCGACCTCTCCCAGGACACACGCGACTGGGAGAATCTCAACGA-C 68188738 Query 61183 GGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTC 61242 || || | || ||||| ||||| || | || ||||| ||||| || ||||| |||||| Sbjct 68188737 GGAGAGCGCCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTC 68188678 Query 61243 AATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 ||||| | ||| ||| | || || || || || |||||||| ||| Sbjct 68188677 CTCGAGAACCTCGCCTCACGGTTCATGTCCGACGTCCAGGTCTCCGAGGCGCGCGCCTTC 68188618 Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362 ||||| |||||||| || || ||||| ||||||| ||||||||||| | || | || Sbjct 68188617 TACGGGTTCCAGATCGCGATCGAGAACATCCACTCCGAGATGTACAGCCTCCTGTTAGAC 68188558 Query 61363 ACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCG 61422 |||||||||| ||| ||| | || | | ||| || |||||||| || || Sbjct 68188557 ACGTACATCAAGGACAACAAGGAGAGGGACCATCTCTTCCGCGCGATCGAGACCATCCC- 68188499 Query 61423 GCGGTGAAGCG--GAAAGCGGATTGGGCCTTCAATTGGATC-ACCAGTACAACGGCTACA 61479 | | | ||| ||| || | |||||| | | |||||| | || | | || Sbjct 68188498 -CTGCGTCGCGAAGAAGGCCCAATGGGCCATGACGTGGATCGATGGGTCCCA----GACT 68188444 Query 61480 TTTGGTGA-ACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGG-ATCGT 61537 || | || | ||| | |||| || ||| || || || | || ||| || | | | Sbjct 68188443 TTCGCCGAGAGGATCG-TGGCCTTCGCGTGCGTGGAAGGGATCTTCTTCTCCGGTAGCTT 68188385 Query 61538 TTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG 61597 || | | ||||| ||| | ||||| || || || |||||||| |||||||| ||| | Sbjct 68188384 CTG-CTCGATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCCGGGTTGACCTTCTCCAACG 68188326 Query 61598 AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 || |||| || | ||||| ||| | || || ||||| || Sbjct 68188325 AGCTGATCTCGAGAGACGAAGGCCTTCACTGCGATTTCGC 68188286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397520777121440