Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq9 242 4e-59 seq14 219 5e-52 seq8 129 6e-25 seq60 120 3e-22 seq16 120 3e-22 seq28 113 5e-20 seq11 104 3e-17 seq390 89.7 6e-13 >seq9 Length=62778564 Score = 242 bits (268), Expect = 4e-59 Identities = 427/618 (69%), Gaps = 7/618 (1%) Strand=Plus/Minus Query 161895 CAATGCTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCC 161954 |||| | || | ||||||||||| |||||||||||||| |||||||| || ||||| Sbjct 56234949 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 56234890 Query 161955 TCTGGGACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTT 162014 || || || || |||||||| | ||| ||||| || || ||||| || | || Sbjct 56234889 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 56234830 Query 162015 CTTACTTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGT 162074 | | || || | ||||| || || |||||| | || ||| | || || ||||||| | Sbjct 56234829 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGATGGGAAT 56234770 Query 162075 CGCAGGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACAC 162134 || ||| | | || | ||| || | | |||||| | |||| ||||| | ||| | Sbjct 56234769 TGCCGGTGTACTTGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAG-AAATAT 56234711 Query 162135 GCTCTACC--AAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAG 162192 | || | || ||||||| ||||||| || |||||| || | | |||| Sbjct 56234710 TTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCC 56234651 Query 162193 GAGGAGACTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCT 162252 || || ||||| || ||||| || || ||||| || ||||||| ||||| || |||| Sbjct 56234650 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCT 56234591 Query 162253 TTTAGTAATAAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGG 162312 ||| ||||| | |||||| || ||||||||| | || || || || | ||| | || Sbjct 56234590 TTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGG 56234531 Query 162313 ACAAGTTCTATCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCT 162372 | ||| || | | || | || || ||| | || || |||| || | ||| | || Sbjct 56234530 ATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 56234471 Query 162373 CAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTC 162432 || || ||| |||||||||| ||||| | | ||||||| ||||| || || ||||| || Sbjct 56234470 CAAGAAATTTGTGCAGCGGAAGATCC-GGACTTGAAACTTTCTATACTAAAAATATTCTT 56234412 Query 162433 TTGAATGAAGGTCTTCGTGCATGGTT---GGCACCAGTTGATCAACCGCATGAGAACTTT 162489 || || |||||| |||| | ||| | ||| | | | | || || ||||| ||| || Sbjct 56234411 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 56234352 Query 162490 GTATTCCCTGAGGAAGTT 162507 ||||| ||||||| ||| Sbjct 56234351 ATATTCACTGAGGAGGTT 56234334 Score = 131 bits (144), Expect = 2e-25 Identities = 146/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 160969 TATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGT 161028 || ||||| |||||||| || |||||||| | ||| || ||||| || ||||| ||| Sbjct 18477112 TACGTCCTCGACGCTGCGGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGT 18477053 Query 161029 GCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCT 161088 ||||||| | ||||| ||||| ||| | |||| ||| || || ||||| || | Sbjct 18477052 TCTTGCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGTTTTGTTGACCAGTCTGACCAGAGT 18476993 Query 161089 TTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACT 161148 ||||| |||||||| || ||| |||| ||||| || ||||| | |||||||| ||| Sbjct 18476992 TTCCTCGATGATGACCAGATTGCTGCAGGGTTTGTTCTCACCTGTGCGGCTTATCCTACT 18476933 Query 161149 TCTGATGTAACTATT 161163 |||||||| || ||| Sbjct 18476932 TCTGATGTTACCATT 18476918 Score = 84.2 bits (92), Expect = 2e-11 Identities = 208/303 (69%), Gaps = 11/303 (4%) Strand=Plus/Plus Query 159908 TTCATCGCTGCTCCCCCT-GTGGACATCGATGGCATCCGTGAACCCGTCG-CTGGTTCAC 159965 ||||| |||||| || || || || || || | || ||||||| || ||||| | | Sbjct 10190728 TTCATTGCTGCTTCCTCTAGTAGATATTGAGTGTATT-GTGAACCTGTTTTCTGGT-CTC 10190785 Query 159966 TCATGTACGGT--AACAACATCATCTCTGGTGCAGTTGTTCC-CTCTTCCAACGCAAT-T 160021 | | || ||| ||||| || | || |||||| | ||| || | || || || | Sbjct 10190786 TTCTTTAAGGTGAAACAATATTAGTTCCGGTGCATTATTTCTACTGTCTCAGGGCTATGT 10190845 Query 160022 GGTCTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAG-TGGCTCTATAACGG 160080 ||| | || || || |||| ||| |||| ||||| | || || ||||| || || | Sbjct 10190846 GGTTTGCATTTTTACGCCATCTGG-AAGCTGCATCCGTTGATGAAATGGCTATACAAACG 10190904 Query 160081 TGGTC-CTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTC 160139 |||| ||| |||| | || | ||||| | | || | | |||||||||| Sbjct 10190905 TGGTTGCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTC 10190964 Query 160140 GTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTG 160199 ||||||||||||| || |||||| ||||||||||| ||||| ||||||||| || | Sbjct 10190965 GTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAG 10191024 Query 160200 CTC 160202 ||| Sbjct 10191025 CTC 10191027 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 160130 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 160189 ||||||||||||||||||||||| || |||||| ||||||||||| ||||| |||| Sbjct 10184690 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTT 10184631 Query 160190 GCATACTCTGCTC 160202 ||||| || |||| Sbjct 10184630 GCATATTCAGCTC 10184618 >seq14 Length=28343526 Score = 219 bits (242), Expect = 5e-52 Identities = 223/291 (77%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 160130 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 160189 ||||||| | ||||||||||||| || | |||| ||||| ||||| ||||| |||| Sbjct 20844999 TATATGGATTGTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTT 20845058 Query 160190 GCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAG 160249 ||||| || | ||| || || ||||| || ||| ||| | ||| ||| | | ||| Sbjct 20845059 GCATATTCAGATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCAA 20845118 Query 160250 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTA 160309 || ||| || ||| ||||||||| || |||||||||||||| |||| |||| ||||| Sbjct 20845119 GGAAGTTTTTCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 20845178 Query 160310 TTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTA 160369 |||||| | || ||||| || |||||||| || || |||||| | ||||| ||||| ||| Sbjct 20845179 TTCCAAACTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 20845238 Query 160370 TTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGT 160420 ||||| || ||||| || |||||||||| | || ||||| | ||||||| Sbjct 20845239 TTCGGCGGCTCTCTTTTTAGTGCTATGCATAGTTCCCTGGTAATTTCTAGT 20845289 Score = 127 bits (140), Expect = 2e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 160969 TATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGT 161028 || ||||| ||||||||||| ||||| || | ||| || ||||| || ||||||||| Sbjct 23727187 TACGTCCTCGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGT 23727246 Query 161029 GCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCT 161088 ||||||| | ||||| ||||| ||| | ||| |||| || || ||||| || | Sbjct 23727247 TCTTGCTCCAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGT 23727306 Query 161089 TTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACT 161148 ||||| |||||||| || ||| |||||| || || || || | |||||||| ||| Sbjct 23727307 TTCCTCGATGATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACT 23727366 Query 161149 TCTGATGTAACTATT 161163 |||||||| || ||| Sbjct 23727367 TCTGATGTTACCATT 23727381 >seq8 Length=29345952 Score = 129 bits (142), Expect = 6e-25 Identities = 142/184 (77%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 160267 TATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAA 160326 ||||||||| | |||||||||||||| |||| |||| |||||||||| || || ||||| Sbjct 6844674 TATGCCTCTAGA-ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAA 6844732 Query 160327 TATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTT 160386 || |||||||| || || || ||| | ||||| ||||| |||||||| || || || || Sbjct 6844733 CATTCTTATGCA-CCATTTCA-ATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATT 6844790 Query 160387 CTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGA 160446 |||||||||| | ||| ||| ||||||||| |||| || || ||| || ||| Sbjct 6844791 TAGTGCTATGCATAGTTCTTTGG-AACTTCTAGTTGAATCAGGGAAACCACAAAAGATGA 6844849 Query 160447 GTCC 160450 ||| Sbjct 6844850 ATCC 6844853 >seq60 Length=523306 Score = 120 bits (132), Expect = 3e-22 Identities = 157/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 161746 CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGG 161805 || |||| |||||| || ||||| ||||| | ||| ||||| || || | ||| Sbjct 21525 CTGTGGGATCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTGG 21584 Query 161806 AATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAA 161865 |||||| || |||||| | |||||| | | || || || ||| | | | | |||||| Sbjct 21585 GCTTTTGTTGCTCTCCACTGTGCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGAA 21644 Query 161866 CTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGC 161924 |||||||| ||| || | | || ||||| ||||| |||| |||| ||||| |||| Sbjct 21645 CTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTGA 21703 Query 161925 TGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGG 161959 ||||||||| ||||||||| || |||||||||| Sbjct 21704 TGTTTTTGTTTCCGTCTTTCTAATTTATCCTCTGG 21738 >seq16 Length=18736220 Score = 120 bits (132), Expect = 3e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 160969 TATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGT 161028 || ||||| ||||||||||| |||||||| | ||| || ||||| || ||||| ||| Sbjct 7499795 TACGTCCTCGACGCTGCTGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGT 7499854 Query 161029 GCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCT 161088 ||||||| | || || ||||| ||| | |||| | || || || ||||| || | Sbjct 7499855 TCTTGCTCGAGCTGCGCAGGTAAAGTTGTGTCTGGTTCGGTTGACCAGTCTGACCAGAGT 7499914 Query 161089 TTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACT 161148 ||||| |||||||| || ||| ||| |||||||| || || | || ||||| ||| Sbjct 7499915 TTCCTCGATGATGACCAGATTGCTGAAGGGTTTGTCCTCACTTGTGCGGCGTATCCTACT 7499974 Query 161149 TCTGATGTAACTAT 161162 |||||||| || || Sbjct 7499975 TCTGATGTTACCAT 7499988 >seq28 Length=1539140 Score = 113 bits (124), Expect = 5e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 160969 TATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGT 161028 || ||||||||||||||||| ||||| || | ||| || ||||| || ||||||||| Sbjct 841686 TACGTCCTTGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGT 841627 Query 161029 GCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCT 161088 | ||||| | ||||| ||||| ||| | ||| |||| || || ||||| || | Sbjct 841626 TCCTGCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGT 841567 Query 161089 TTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACT 161148 ||||| |||||||| || ||| |||||| || || || || | ||||||| ||| Sbjct 841566 TTCCTCGATGATGACCAGATTGCGGAAGGATTCGTTCTCACTTGTGCGGCTTATCTTACT 841507 Query 161149 TCTGATGTAACTATT 161163 | ||||| || ||| Sbjct 841506 TTCGATGTTACCATT 841492 >seq11 Length=32467241 Score = 104 bits (114), Expect = 3e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 160969 TATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGT 161028 || ||||| |||||||| || ||||| || | ||| || ||||| || || || ||| Sbjct 7692643 TACGTCCTCGACGCTGCGGAGGAAGCCGGGATCGACTTGCCTTACTCTTGCCGCGCCGGT 7692584 Query 161029 GCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCT 161088 | ||||| | ||||| ||||| ||| | || |||| || || ||||| || | Sbjct 7692583 TCCTGCTCGAGCTGTGCGGGTAAAGTTGTGTCCGGATCTGTTGACCAGTCTGACCAGAGT 7692524 Query 161089 TTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACT 161148 ||||| |||||||| || ||| ||| ||||| || || || | |||||||| ||| Sbjct 7692523 TTCCTCGATGATGACCAGATTGCTGAAGGGTTTGTTCTCACTTGTGCGGCTTATCCTACT 7692464 Query 161149 TCTGATGTAACTATT 161163 |||||||| || ||| Sbjct 7692463 TCTGATGTTACCATT 7692449 >seq390 Length=101491 Score = 89.7 bits (98), Expect = 6e-13 Identities = 92/118 (78%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 161808 TTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACT 161867 |||||| || ||||| || |||||||| | || || || ||| | ||||| |||||||| Sbjct 2251 TTTTGTTGCTCTCCATGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACT 2310 Query 161868 TGCTCG-TCTTATCGGTATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGC 161924 |||||| ||| || | | || ||||| ||||| || || ||||||||||| ||||| Sbjct 2311 TGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGC 2367 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 161808 TTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACT 161867 |||||| || ||||| || |||||||| | || || || || | ||||| |||||||| Sbjct 9888 TTTTGTTGCTCTCCATGGTGCTTTCGCATTAATAGGTTTTTTGTTACGTCAATTTGAACT 9947 Query 161868 TGCTCG-TCTTATCGGTATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGC 161924 |||||| ||| || | | || ||||| ||||| || || ||||||||||| ||||| Sbjct 9948 TGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGC 10004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551308828618800