Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq9 269 3e-67 seq14 145 1e-29 seq60 122 1e-22 seq3071 96.9 4e-15 seq8 96.9 4e-15 seq390 84.2 3e-11 >seq9 Length=62778564 Score = 269 bits (298), Expect = 3e-67 Identities = 445/638 (70%), Gaps = 7/638 (1%) Strand=Plus/Minus Query 190367 CAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCC 190426 |||| | || | ||||||||||| || |||||||||||| |||||||| || || || Sbjct 56234949 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 56234890 Query 190427 TCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCAGCGATCTTCCGCTT 190486 || |||||||| ||||||||| | ||| || ||||| || || || || || || Sbjct 56234889 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 56234830 Query 190487 CCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCCACATGATGGGTGT 190546 | ||||||| || || || || ||||| ||| | ||||| | || || ||||||| | Sbjct 56234829 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGATGGGAAT 56234770 Query 190547 TGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGGTGTGACTGTAGAGAATAC 190606 ||| ||| | || || | || || | | || || |||||| |||||||| |||| Sbjct 56234769 TGCCGGTGTACTTGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AATAT 56234711 Query 190607 TTTGTA--TGAAGATGGTGAACAAGCAAACACGTTTAAAGCATTCGACTCTACACAAGAG 190664 ||| || |||| ||||||| ||||| | || || || || | | |||| Sbjct 56234710 TTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCC 56234651 Query 190665 GAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTTGGTGTTGCG 190724 ||||| || ||||| |||||||| || ||||| || ||||| | ||||||||| | ||| Sbjct 56234650 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCT 56234591 Query 190725 TTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTGTGG 190784 || ||||| ||||| || ||||||||| | ||||| || || | ||| | || Sbjct 56234590 TTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGG 56234531 Query 190785 ACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCC 190844 | | | | | || | ||||| ||| | ||||| |||| |||| ||| | ||| Sbjct 56234530 ATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 56234471 Query 190845 CAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTTTACACAAAAAATATACTT 190904 ||||| || | ||||| |||||||| || || || ||||| || || |||||||| ||| Sbjct 56234470 CAAGAAATTTGTGCAGCGGAAGATCCGGACTT-GAAACTTTCTATACTAAAAATATTCTT 56234412 Query 190905 TTGAATGAAGGTCTTCGTTCATGGTTGGCACCT---GTTGATCAACCCCATGAGAATTTT 190961 || || |||||| |||| | ||| |||| || | | | || || ||||| || || Sbjct 56234411 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 56234352 Query 190962 GTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 |||| | || || || || ||| | || | | |||| Sbjct 56234351 ATATTCACTGAGGAGGTTTTACCACGTGGAAGCACTCT 56234314 >seq14 Length=28343526 Score = 145 bits (160), Expect = 1e-29 Identities = 203/282 (72%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 189178 TACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGC-AT 189236 || |||| | ||||||||||||| || | |||| ||||| ||||||||||| ||| | Sbjct 20844999 TATATGGATTGTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGAT-TGCTGT 20845057 Query 189237 TGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCA 189296 ||| || || | ||||||||| | || | || || || ||| || ||| ||| Sbjct 20845058 TGCATATTCAGATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCA 20845117 Query 189297 AGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGT 189356 ||| ||| ||||| ||||| | || ||| ||| || ||||||| ||| |||| Sbjct 20845118 AGGAAGTTTTTCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGT 20845177 Query 189357 CTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGT 189416 |||||| | ||||||||||| || |||||||| || |||||| | || || || ||||| Sbjct 20845178 ATTCCAAACTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 20845237 Query 189417 CTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGT 189458 ||||| || || || || || |||||| |||| || || Sbjct 20845238 ATTCGGCGGCTCTCTTTTTAGTGCTATGCATAGTTCCCTGGT 20845279 >seq60 Length=523306 Score = 122 bits (134), Expect = 1e-22 Identities = 181/254 (71%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 190179 TCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCAA 190238 || || |||||| || | | | |||||| | | ||| |||| ||||||| | ||| Sbjct 21486 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGATGTAACTGTGGGATCCTGAAGCACAA 21545 Query 190239 GGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGG 190298 || ||||| | ||| ||||| || || | ||||||||||| || |||||| | Sbjct 21546 GGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTGGGCTTTTGTTGCTCTCCACTGT 21605 Query 190299 GCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTAT 190357 |||||| | |||| || || ||| | | | | |||||||| || || ||| || | | Sbjct 21606 GCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGAACTTGCTCGATCTGTTCAAT-T 21664 Query 190358 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCT 190417 || ||||| ||||| |||| |||| ||||| || | |||||||||| ||||||||| Sbjct 21665 GCGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTGATGTTTTTGTTTCCGTCTTTCT 21724 Query 190418 CATCTACCCTCTGG 190431 || || ||||||| Sbjct 21725 AATTTATCCTCTGG 21738 >seq3071 Length=6037 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 189688 AACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAAC 189747 ||||| ||||| ||||| ||||| ||||| | ||||| ||||||| |||||| | || Sbjct 1741 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTTTTAAT 1682 Query 189748 ACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGA 189800 || ||||| || || | ||||||||| |||||||||||||| ||| |||| Sbjct 1681 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGTATGA 1629 >seq8 Length=29345952 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 189688 AACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAAC 189747 ||||| ||||| ||||| ||||| ||||| | ||||| ||||||| |||||| | || Sbjct 10479929 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTTTTAAT 10479870 Query 189748 ACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGA 189800 || ||||| || || | ||||||||| |||||||||||||| ||| |||| Sbjct 10479869 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGTATGA 10479817 >seq390 Length=101491 Score = 84.2 bits (92), Expect = 3e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 190278 GCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAA 190337 |||||||| || ||||| || |||||||| |||| || || ||| | ||||| |||||| Sbjct 2249 GCTTTTGTTGCTCTCCATGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAA 2308 Query 190338 CTGGCACG-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGC 190396 || || || ||| || | | || ||||| ||||| || || ||||||||||| || || Sbjct 2309 CTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGC 2367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634002753204000