Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq9 260 2e-64 seq14 196 5e-45 seq8 111 2e-19 seq60 87.8 2e-12 >seq9 Length=62778564 Score = 260 bits (288), Expect = 2e-64 Identities = 400/568 (70%), Gaps = 2/568 (0%) Strand=Plus/Minus Query 164267 CAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCC 164326 |||| | || | ||||||||||| |||||||| ||||| || || || || || || Sbjct 56234949 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 56234890 Query 164327 TCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATT 164386 || || |||||| ||||||||||| || ||||| || ||||| || || |||| Sbjct 56234889 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 56234830 Query 164387 CCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGT 164446 | || | || ||||||| || ||||| ||| |||| || | || ||| ||||||| | Sbjct 56234829 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGATGGGAAT 56234770 Query 164447 TGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGA-ATA 164505 ||| || | ||||| | ||||| | || |||||| |||||||||| ||||| | || Sbjct 56234769 TGCCGGTGTACTTGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGAAATATT 56234710 Query 164506 CTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGG 164565 ||| | |||| ||||||| |||||| || || || | || | ||||| | Sbjct 56234709 TTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCCG 56234650 Query 164566 AAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTT 164625 |||| ||||| || |||||||| || |||||||| ||||| | || ||||| ||||| Sbjct 56234649 AAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCTT 56234590 Query 164626 TCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGA 164685 | |||||| | |||||| || ||||||||| | ||||| || || | || | ||| Sbjct 56234589 TTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGGA 56234530 Query 164686 CAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTC 164745 ||| || ||| || | ||||| || | || || |||| |||| || | || | Sbjct 56234529 TGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCCC 56234470 Query 164746 AGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCC 164805 | || ||| | ||||| || ||||| | | |||| || |||||||| || || || || Sbjct 56234469 AAGAAATTTGTGCAGCGGAAGATCC-GGACTTGAAACTTTCTATACTAAAAATATTCTTT 56234411 Query 164806 TCAATGAAGGACTCCGTGCCTGGATGGC 164833 | || ||||| | || | |||||||| Sbjct 56234410 TAAACGAAGGTATTCGCACTTGGATGGC 56234383 Score = 114 bits (126), Expect = 1e-20 Identities = 264/376 (70%), Gaps = 20/376 (5%) Strand=Plus/Plus Query 160606 TTTAC-GTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTG-TTGGCAGCAACCGTCTG 160663 ||||| || || ||||| ||||| |||||||||| || | ||| | || || | Sbjct 10190658 TTTACAGTTGGATGGTTTGGTGTTTTGATGATCCCTACCTTAATTGACCGCTACTTCCGT 10190717 Query 160664 CTTTATTACTGCGTTCGTTGCTGCTCCCCCC-GTGGACATCGACGGTATCCGTGAACCCG 160722 ||||||| ||| |||||||| || | || || || || |||| ||||||| | Sbjct 10190718 TTTTATTAGA---TTCATTGCTGCTTCCTCTAGTAGATATTGAGTGTATT-GTGAACCTG 10190773 Query 160723 TTG-CTGGTTCACTGATGTATGG--AAACAACATCATCTCTGGTGCAGTTGTTCCTTCT- 160778 || ||||| | || | || || |||||| || | || |||||| || || || || Sbjct 10190774 TTTTCTGGT-CTCTTCTTTAAGGTGAAACAATATTAGTTCCGGTGCA-TTATTTCTACTG 10190831 Query 160779 TC-CAACGCAAT-TGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAA- 160835 || || || || |||| | || || ||| |||| ||| |||||||||| |||||||| Sbjct 10190832 TCTCAGGGCTATGTGGTTTGCATTTTTACGCCATCTGG-AAGCTGCATCCGTTGATGAAA 10190890 Query 160836 TGGCTCTACAATGGTGGTC-CTTACCAACTGGTCGTATTTCACTTCCTGATCGGCATCTT 160894 ||||| ||||| ||||| |||| |||| | || | ||||| | | || | Sbjct 10190891 TGGCTATACAAACGTGGTTGCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGC 10190950 Query 160895 CTGCTACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTG 160954 || || |||||||| |||||||||||| | ||| || || ||||| || ||||| || Sbjct 10190951 TTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TG 10191009 Query 160955 C-GTTGCATATTCTGC 160969 | ||||||||||| || Sbjct 10191010 CTGTTGCATATTCAGC 10191025 >seq14 Length=28343526 Score = 196 bits (216), Expect = 5e-45 Identities = 222/295 (75%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 160893 TTCTGCTACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATC 160952 || || || |||| | | |||||||||||| | | | || || || || || ||||| Sbjct 20844993 TTTTGTTATATGGATTGTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGAT- 20845051 Query 160953 TGC-GTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTT 161011 ||| ||||||||||| | |||||||| |||| | || || ||| | ||| || | Sbjct 20845052 TGCTGTTGCATATTCAGATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAAT 20845111 Query 161012 CGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCAT 161071 | |||||| ||| |||||| ||||||| || || ||||||||||| |||||||| || Sbjct 20845112 TGATCAAGGAAGTTTTTCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTAT 20845171 Query 161072 GCTTGTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGC 161131 | |||| ||||| | || |||||||| || |||||||| || |||||||| ||||| || Sbjct 20845172 GGTTGTATTCCAAACTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGC 20845231 Query 161132 TGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCT 161186 |||||| ||||| || ||||| || || |||||| |||| ||||| | |||| Sbjct 20845232 TGGTGTATTCGGCGGCTCTCTTTTTAGTGCTATGCATAGTTCCCTGGTAATTTCT 20845286 >seq8 Length=29345952 Score = 111 bits (122), Expect = 2e-19 Identities = 118/152 (78%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 161035 GTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACA 161094 ||||||| || | ||||||||||| |||||||| ||| |||| |||||||| || |||| Sbjct 6844673 GTATGCCTCTAGA-ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACA 6844731 Query 161095 ACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGT 161154 |||| || ||||||| ||| ||||| ||||| |||||||| ||||| || || || | Sbjct 6844732 ACATTCTTATGCACCATTTC--AATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTAT 6844789 Query 161155 TCTCCGCAATGCATGGTTCACTGGTTACTTCT 161186 | || |||||| |||| ||| |||||| Sbjct 6844790 TTAGTGCTATGCATAGTTCTTTGG-AACTTCT 6844820 >seq60 Length=523306 Score = 87.8 bits (96), Expect = 2e-12 Identities = 170/251 (68%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 164079 TCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 164138 || || |||||| || | | | |||||| | | ||| |||| |||||| | || Sbjct 21486 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGATGTAACTGTGGGATCCTGAAGCACAA 21545 Query 164139 GGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGA 164198 || || || | | | ||||| ||||| || || | ||||||||||| || ||||| | Sbjct 21546 GGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTGGGCTTTTGTTGCTCTCCACTGT 21605 Query 164199 TCTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATC 164258 ||||| | | || ||||| ||| | | | |||||| |||| || ||| | Sbjct 21606 GCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGAACTTGCTCGATCTGTTCAATTG 21665 Query 164259 CGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTT 164318 || || || ||||| |||| |||| ||||| |||| ||| ||||| ||| || || Sbjct 21666 CGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTGATGTTTTTGTTTCCGTCTTTCTA 21725 Query 164319 ATGTACCCTCT 164329 || || ||||| Sbjct 21726 ATTTATCCTCT 21736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559259859866400