Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq14 96.9 5e-15 seq3 87.8 2e-12 >seq14 Length=28343526 Score = 96.9 bits (106), Expect = 5e-15 Identities = 173/253 (68%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 162580 AACTACAGGGAAAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAATCACGAAAGC 162639 |||||| | ||| || | ||| | |||| || ||| || || ||||| ||||| Sbjct 8372456 AACTACCGTGAAGCATACGGCATGTACGCCTGTAACGGGATCCTGTTCAACCACGAGTCG 8372515 Query 162640 TCACGCAGAGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGT 162699 | ||| |||| |||| ||||| || || ||||| | | |||||| | || | Sbjct 8372516 CCTCGCCGAGGCGAGAACTTCGTGACTCGGAAGATAACCAGGGCCTTGGGGAGGATCAAG 8372575 Query 162700 GTGGGACTCCAAAGTGATCTACAACTTGGAAACCTCAATGCCCGACGTGACTGGGGACAC 162759 || ||||| || | | || || |||||| | | || | | |||||||| | Sbjct 8372576 GTCGGACTGCAGACCAAGCTTTTCCTGGGAAACATACAGGCGTCAAGAGACTGGGGGTTC 8372635 Query 162760 GCCAAAGACTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTAT 162819 || |||||||||||||| |||||| ||||||| ||||| || || |||||||| || Sbjct 8372636 GCGGGGGACTACGTAGAGGCAATGTGGCTGATGCTGCAGCAGGACAAACCAGATGACTAC 8372695 Query 162820 GTGATCGCAACTG 162832 ||| | ||||||| Sbjct 8372696 GTGGTGGCAACTG 8372708 >seq3 Length=43957692 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 162746 GTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGA 162805 ||||||||||| ||| |||||||| ||||| |||||| ||||||| ||||| |||| Sbjct 20744433 GTGACTGGGGATTCGCAGGGGACTACGTGGAGGCAATGTGGCTGATGCTGCAGCAGGAGA 20744374 Query 162806 AGCCAGATGATTATGTGATCGCAACTGGTGAGC 162838 | ||||||||||| ||| | ||||| | |||| Sbjct 20744373 AACCAGATGATTACGTGGTGGCAACAGAGGAGC 20744341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691374962982960