Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq16 269 7e-70 seq4 269 7e-70 seq9 264 3e-68 seq1374 257 4e-66 seq60 158 3e-36 seq10 132 1e-28 seq1375 114 3e-23 seq5 114 3e-23 seq2 87.8 5e-15 seq527 86.0 2e-14 seq19 77.0 8e-12 >seq16 Length=39632211 Score = 269 bits (298), Expect = 7e-70 Identities = 308/418 (74%), Gaps = 27/418 (6%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 8760501 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 8760560 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8760561 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 8760620 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || ||| | | | || | ||| Sbjct 8760621 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 8760680 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 8760681 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 8760740 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 8760741 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CC 8760794 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | ||| | ||||||||||||||||||| || || Sbjct 8760795 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 8760837 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 8760838 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 8760895 >seq4 Length=41855496 Score = 269 bits (298), Expect = 7e-70 Identities = 308/418 (74%), Gaps = 27/418 (6%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 22280385 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 22280326 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 22280325 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 22280266 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || ||| | | | || | ||| Sbjct 22280265 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 22280206 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 22280205 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 22280146 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 22280145 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CC 22280092 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | ||| | ||||||||||||||||||| || || Sbjct 22280091 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 22280049 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 22280048 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 22279991 Score = 102 bits (112), Expect = 2e-19 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || |||||||||| || ||| | |||||| ||| || Sbjct 1703663 TACTCCGCATCTTCACGGAGAATTCAATTTCATTGGGTCCATGTCGGAGACTGCGGGGCA 1703722 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| ||| |||||||||| ||| ||||| Sbjct 1703723 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGATAAGGAATTTCACTATCTTAGAG 1703782 Query 127 CCGT 130 |||| Sbjct 1703783 CCGT 1703786 Score = 102 bits (112), Expect = 2e-19 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || |||||||||| || ||| | |||||| ||| || Sbjct 1705742 TACTCCGCATCTTCACGGAGAATTCAATTTCATTGGGTCCATGTCGGAGACTGCGGGGCA 1705801 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| ||| |||||||||| ||| ||||| Sbjct 1705802 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGATAAGGAATTTCACTATCTTAGAG 1705861 Query 127 CCGT 130 |||| Sbjct 1705862 CCGT 1705865 >seq9 Length=46179939 Score = 264 bits (292), Expect = 3e-68 Identities = 308/418 (74%), Gaps = 27/418 (6%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 9424827 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 9424886 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9424887 ACGCCTTTCGTGCCGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 9424946 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGC-GTTAGC---TAACCC 188 | ||||||||||||||| |||||||||||| || ||| | | || | | | ||| Sbjct 9424947 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAAGTCACCA 9425006 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 9425007 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 9425066 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 9425067 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CC 9425120 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| ||| | ||||||||||||||||||| || || Sbjct 9425121 CTTTGTGAG-----------------GGGGCACCCCTTCTCCCGAAGTTACGGGGCTATT 9425163 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 9425164 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 9425221 >seq1374 Length=221853 Score = 257 bits (284), Expect = 4e-66 Identities = 304/412 (74%), Gaps = 21/412 (5%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||||| ||| | |||||||||| || Sbjct 122215 TACTCCGCATCTTCACGGAGAATTCAATTTCACTGGGTCCATGTCGGAGACAGCGGGGCA 122156 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 122155 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 122096 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||||||||||||||||||||| || | ||||| || | || Sbjct 122095 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTT----ATAAC--AC 122042 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | || || |||| |||||||||||| |||| || |||||| || || | | Sbjct 122041 TTCTCCTTTTGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 121982 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 | ||||||| ||||||||||||||||||||||| | |||||||| | | | | | Sbjct 121981 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTA 121922 Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 | | | || || |||| ||||||||||||||||||| | | Sbjct 121921 ATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGTCA 121877 Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 ||||||| ||||||||| | ||||||||||||||| | |||| |||||| Sbjct 121876 TTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 121825 >seq60 Length=783450 Score = 158 bits (174), Expect = 3e-36 Identities = 135/167 (81%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||||| ||| | ||||| |||| || Sbjct 655580 TACTCCGCATCTTCACGGAGAATTCAATTTCACTGGGTCCATGTCGGAGATAGCGGGGCA 655639 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||| | ||||| |||||||||||||||||||||||||| Sbjct 655640 GTCGTTACACCATTCGTGCAGGTTGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 655699 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTT 173 | ||| |||| ||||||||||||||||||||| || | ||||| Sbjct 655700 CAATTAGAGTTATTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTT 655746 >seq10 Length=21498587 Score = 132 bits (146), Expect = 1e-28 Identities = 93/106 (88%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 ||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 14714355 TCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGAC 14714296 Query 128 CGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTT 173 |||| ||||| ||||||||||||||||||||| || | ||||| Sbjct 14714295 AGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTT 14714250 >seq1375 Length=152860 Score = 114 bits (126), Expect = 3e-23 Identities = 162/232 (70%), Gaps = 23/232 (10%) Strand=Plus/Minus Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 || |||||||||||| |||||||||||| ||| |||| | ||| || ||||| ||| Sbjct 105313 TTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAG 105254 Query 255 TGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACG 314 |||||||||| ||||||||||| |||||||| || ||||| ||| Sbjct 105253 ACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CCCTTTGT 105200 Query 315 GAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCT 374 ||| | ||| | ||||||||||||||||||| || ||||||| Sbjct 105199 GAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCG 105157 Query 375 AGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 105156 AGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 105105 Score = 114 bits (126), Expect = 3e-23 Identities = 162/232 (70%), Gaps = 23/232 (10%) Strand=Plus/Plus Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 || |||||||||||| |||||||||||| ||| |||| | ||| || ||||| ||| Sbjct 130578 TTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAG 130637 Query 255 TGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACG 314 |||||||||| ||||||||||| |||||||| || ||||| ||| Sbjct 130638 ACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CCCTTTGT 130691 Query 315 GAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCT 374 ||| | ||| | ||||||||||||||||||| || ||||||| Sbjct 130692 GAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCG 130734 Query 375 AGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 130735 AGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 130786 >seq5 Length=35747119 Score = 114 bits (126), Expect = 3e-23 Identities = 89/106 (84%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 32163792 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 32163733 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTA 118 ||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct 32163732 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTA 32163687 >seq2 Length=31488241 Score = 87.8 bits (96), Expect = 5e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 || |||||||||||| |||||||||||| ||| |||| | ||| || ||||| ||| Sbjct 3079724 TTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAG 3079665 Query 255 TGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 |||||||||| ||||||||||| |||||||| || ||||| Sbjct 3079664 ACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC 3079619 >seq527 Length=26230 Score = 86.0 bits (94), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 15/230 (7%) Strand=Plus/Plus Query 49 GGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGG 108 || || ||||| | || ||||| |||||| ||| ||||||||||||||||||||| Sbjct 21610 GGCGGGGACAGTGGGGCTCTCGTTGTTCCATTCATGCGCGTCGGAACTTACCCGACAAGG 21669 Query 109 AATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAG 168 |||| ||||||||| || || | ||||| ||| |||| ||||| ||| Sbjct 21670 CATTTGGCTACCTTAAGAGAGTCAGAGTTACTCCCGGCGTTAACCGGCCCTT-------- 21721 Query 169 AGCTTCGCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCT 228 ||| ||| ||| ||||| | || | | |||||||||| |||| ||| || Sbjct 21722 AGC-TCG-GTT---GAACCCAA--GTTTTAGGTACCGGCACCGGCCAGGATTCAGTGACT 21774 Query 229 ATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 |||| |||||| | |||| ||||||||||| |||||||||| Sbjct 21775 ATACAAATCCTTTCGGACTAGCAGTCACCTGTGTTTTTATTAAACAGTCG 21824 >seq19 Length=23213773 Score = 77.0 bits (84), Expect = 8e-12 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 17059827 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 17059886 Query 73 ACGCCATTCGTGCAGGTCGGAACTT 97 ||||| ||||||| ||||||||||| Sbjct 17059887 ACGCCTTTCGTGCGGGTCGGAACTT 17059911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260782651392