Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq16 338 1e-90 seq4 338 1e-90 seq9 331 2e-88 seq1374 264 2e-68 seq1375 174 3e-41 seq2 156 9e-36 seq60 132 1e-28 seq5 132 1e-28 seq10 120 6e-25 seq19 95.1 3e-17 seq527 87.8 4e-15 >seq16 Length=39632211 Score = 338 bits (374), Expect = 1e-90 Identities = 289/353 (82%), Gaps = 8/353 (2%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 8760501 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 8760560 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8760561 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 8760620 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||| | | | || | || Sbjct 8760621 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 8760680 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 8760681 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 8760740 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCA 299 || || ||||||||||||||||||||||||| |||||| || ||||| ||| | Sbjct 8760741 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGT 8760800 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 8760801 GAG-GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 8760852 >seq4 Length=41855496 Score = 338 bits (374), Expect = 1e-90 Identities = 289/353 (82%), Gaps = 8/353 (2%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 22280385 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 22280326 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 22280325 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 22280266 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||| | | | || | || Sbjct 22280265 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 22280206 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 22280205 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 22280146 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCA 299 || || ||||||||||||||||||||||||| |||||| || ||||| ||| | Sbjct 22280145 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGT 22280086 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 22280085 GAG-GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 22280034 Score = 73.4 bits (80), Expect = 8e-11 Identities = 88/118 (75%), Gaps = 4/118 (3%) Strand=Plus/Plus Query 230 GTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTG 289 ||||| |||||| || || |||| | |||||| |||| ||||| ||| || || ||| Sbjct 32282257 GTCTTACGACTTTGCGGAGACCTATATTTTTGATAAAAAGTCGTCCGGGTCTGGTCACTG 32282316 Query 290 CGGCC---TGTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGA 344 || || | | || |||| ||| ||||||| ||||||||||| |||||||||| Sbjct 32282317 CGACCCCCTTTGTGAGG-AGGCCCCCTTTCTCCCGAAGTTACGGGGCTATTTTGCCGA 32282373 >seq9 Length=46179939 Score = 331 bits (366), Expect = 2e-88 Identities = 288/355 (81%), Gaps = 12/355 (3%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 9424827 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 9424886 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9424887 ACGCCTTTCGTGCCGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 9424946 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||| | | | || | || Sbjct 9424947 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAAGTCACCA 9425006 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 9425007 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 9425066 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC-----TGT 297 || || ||||||||||||||||||||||||| |||||| || ||||| || ||| Sbjct 9425067 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGT 9425126 Query 298 CATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | | ||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 9425127 GAGGG---GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 9425178 >seq1374 Length=221853 Score = 264 bits (292), Expect = 2e-68 Identities = 284/376 (76%), Gaps = 20/376 (5%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||| | ||| || ||||||| | | Sbjct 122215 TACTCCGCATCTTCACGGAGAATTCAATTTCACTGGGTCCATGTCGGAGACAGCGGGGCA 122156 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 122155 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 122096 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| |||||||||||| ||||||| |||| ||| | |||| Sbjct 122095 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATAAC 122044 Query 181 AGATCCCC--TTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | || || || || ||||||||||||||||| ||||| ||||||||||| || | | Sbjct 122043 ACTTCTCCTTTTGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 121984 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 ||||||||| ||||||||||| |||||||||||| ||| | | ||| || | | Sbjct 121983 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 121924 Query 299 ------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348 | ||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 121923 TAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTC 121864 Query 349 CTTAACAATAGTTCTC 364 ||| || |||||| Sbjct 121863 CTTCGACATGGTTCTC 121848 >seq1375 Length=152860 Score = 174 bits (192), Expect = 3e-41 Identities = 141/169 (83%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| || | Sbjct 105315 CCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGG 105256 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCATAGA 303 | ||||||||||||||||||||||||| |||||| || ||||| ||| | || Sbjct 105255 AGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGTGAG- 105197 Query 304 CAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 105196 GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 105148 Score = 174 bits (192), Expect = 3e-41 Identities = 141/169 (83%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| || | Sbjct 130576 CCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGG 130635 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCATAGA 303 | ||||||||||||||||||||||||| |||||| || ||||| ||| | || Sbjct 130636 AGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGTGAG- 130694 Query 304 CAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 130695 GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 130743 Score = 89.7 bits (98), Expect = 1e-15 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 105440 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 105381 Query 67 ACGCCTTTCGTGCGGGTCGGAA 88 |||||||||||||||||||||| Sbjct 105380 ACGCCTTTCGTGCGGGTCGGAA 105359 Score = 89.7 bits (98), Expect = 1e-15 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 130451 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 130510 Query 67 ACGCCTTTCGTGCGGGTCGGAA 88 |||||||||||||||||||||| Sbjct 130511 ACGCCTTTCGTGCGGGTCGGAA 130532 >seq2 Length=31488241 Score = 156 bits (172), Expect = 9e-36 Identities = 134/165 (81%), Gaps = 8/165 (5%) Strand=Plus/Minus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| || | Sbjct 3079726 CCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGG 3079667 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC-----TGTCATA 301 | ||||||||||||||||||||||||| |||||| || ||||| || ||| | Sbjct 3079666 AGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGTGAGG 3079607 Query 302 GACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGT 346 | |||||| |||||||| ||||||||||| |||||||||||| Sbjct 3079606 G---GGCACCTCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGT 3079565 >seq60 Length=783450 Score = 132 bits (146), Expect = 1e-28 Identities = 156/211 (74%), Gaps = 10/211 (5%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||| | ||| || |||| || | | Sbjct 655580 TACTCCGCATCTTCACGGAGAATTCAATTTCACTGGGTCCATGTCGGAGATAGCGGGGCA 655639 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||| | ||||| |||||||||||||||||||||||||| Sbjct 655640 GTCGTTACACCATTCGTGCAGGTTGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 655699 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | ||| ||||| |||||||||||| ||||||| |||| ||| | |||| Sbjct 655700 CAATTAGAGTTATTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATAAC 655751 Query 181 AGATCCCC--TTAACCTTCCAGCACCGGGCA 209 | || || || || ||||||||||||||| Sbjct 655752 ACTTCTCCTTTTGACTTTCCAGCACCGGGCA 655782 >seq5 Length=35747119 Score = 132 bits (146), Expect = 1e-28 Identities = 93/106 (88%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 32163792 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 32163733 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTA 112 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 32163732 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTA 32163687 >seq10 Length=21498587 Score = 120 bits (132), Expect = 6e-25 Identities = 90/106 (85%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121 ||||||| || ||||||| ||||| ||||| ||||||||||||||||||||||||||| Sbjct 14714355 TCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGAC 14714296 Query 122 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTT 167 |||| |||||| |||||||||||| ||||||| |||| |||| Sbjct 14714295 AGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTT 14714250 >seq19 Length=23213773 Score = 95.1 bits (104), Expect = 3e-17 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 17059827 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 17059886 Query 67 ACGCCTTTCGTGCGGGTCGGAACTT 91 ||||||||||||||||||||||||| Sbjct 17059887 ACGCCTTTCGTGCGGGTCGGAACTT 17059911 >seq527 Length=26230 Score = 87.8 bits (96), Expect = 4e-15 Identities = 147/211 (70%), Gaps = 15/211 (7%) Strand=Plus/Plus Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121 ||||| || ||| |||| ||||||||||||||||||||| |||| ||||||||| || Sbjct 21629 TCGTTGTTCCATTCATGCGCGTCGGAACTTACCCGACAAGGCATTTGGCTACCTTAAGAG 21688 Query 122 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACA 181 || | |||||| ||| |||| || || |||| || ||| ||| ||| Sbjct 21689 AGTCAGAGTTACTCCCGGCGTTAACCGGCCCTTA--------GC-TCGGTTG----AACC 21735 Query 182 GATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTT 241 | || | | || ||||||| |||| |||| ||||||| ||| || | Sbjct 21736 CA--AGTTTTAGGTACCGGCACCGGCCAGGATTCAGTGACTATACAAATCCTTTCGGACT 21793 Query 242 AGCAGAAACCTGTGTTTTTGGTAAACAGTCG 272 ||||| |||||||||||| |||||||||| Sbjct 21794 AGCAGTCACCTGTGTTTTTATTAAACAGTCG 21824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062385381376