Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq1374 113 5e-23 seq16 107 2e-21 seq9 107 2e-21 seq4 107 2e-21 seq60 98.7 1e-18 seq10 87.8 2e-15 seq5 82.4 8e-14 >seq1374 Length=221853 Score = 113 bits (124), Expect = 5e-23 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||||| Sbjct 122240 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACTG 122181 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 122180 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 122121 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| |||| Sbjct 122120 GACAAGGAATTTCGCTACCTTAGGACAGTTA 122090 >seq16 Length=39632211 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 8760472 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 8760531 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 8760532 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 8760590 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 8760591 ACAAGGAATTTCGCTACCTTAGGACCGTTA 8760620 >seq9 Length=46179939 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 9424798 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 9424857 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 9424858 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCCGGTCGGAACTTACCCG 9424916 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 9424917 ACAAGGAATTTCGCTACCTTAGGACCGTTA 9424946 >seq4 Length=41855496 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 22280414 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 22280355 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 22280354 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 22280296 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 22280295 ACAAGGAATTTCGCTACCTTAGGACCGTTA 22280266 Score = 77.0 bits (84), Expect = 4e-12 Identities = 90/126 (71%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 46 GGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNN 105 |||| || |||||||||| || | | |||||||| || | || | ||||| | Sbjct 1703661 GGTACTCCGCATCTTCACGGAGAATTCAATTTCATTGGGTCCATGTCGGAGACTGCGGGG 1703720 Query 106 NNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165 |||||||||||||||||||| ||||| ||| |||||||||| ||| ||||| Sbjct 1703721 CAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGATAAGGAATTTCACTATCTTAG 1703780 Query 166 GACCGT 171 |||| Sbjct 1703781 AGCCGT 1703786 Score = 77.0 bits (84), Expect = 4e-12 Identities = 90/126 (71%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 46 GGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNN 105 |||| || |||||||||| || | | |||||||| || | || | ||||| | Sbjct 1705740 GGTACTCCGCATCTTCACGGAGAATTCAATTTCATTGGGTCCATGTCGGAGACTGCGGGG 1705799 Query 106 NNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165 |||||||||||||||||||| ||||| ||| |||||||||| ||| ||||| Sbjct 1705800 CAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGATAAGGAATTTCACTATCTTAG 1705859 Query 166 GACCGT 171 |||| Sbjct 1705860 AGCCGT 1705865 >seq60 Length=783450 Score = 98.7 bits (108), Expect = 1e-18 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||||| Sbjct 655555 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACTG 655614 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | |||| || |||||||||||||||||| | ||||| | Sbjct 655615 GGTCCATGTCGGAGATAGCGGGGCAGTCGTTACACCATTCGTGCAGGTTGCTACTTATGC 655674 Query 143 GACAAGGAATTTCGCTACCTTAGGAC 168 |||||||||||||||||||||||||| Sbjct 655675 GACAAGGAATTTCGCTACCTTAGGAC 655700 >seq10 Length=21498587 Score = 87.8 bits (96), Expect = 2e-15 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| Sbjct 14714351 TACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGACAGTT 14714292 Query 173 A 173 | Sbjct 14714291 A 14714291 >seq5 Length=35747119 Score = 82.4 bits (90), Expect = 8e-14 Identities = 99/136 (73%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 32163821 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 32163762 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 32163761 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 32163703 Query 144 ACAAGGAATTTCGCTA 159 |||||||||||||||| Sbjct 32163702 ACAAGGAATTTCGCTA 32163687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547192705824