Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq16 132 9e-29 seq9 132 9e-29 seq4 132 9e-29 seq1375 127 4e-27 seq527 98.7 2e-18 seq1374 80.6 5e-13 >seq16 Length=39632211 Score = 132 bits (146), Expect = 9e-29 Identities = 178/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 8762530 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 8762471 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| |||| Sbjct 8762470 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTTAACCT-----TTTGA-- 8762419 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 8762418 -ACTGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 8762361 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 8762360 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 8762301 Query 249 CCT 251 ||| Sbjct 8762300 CCT 8762298 >seq9 Length=46179939 Score = 132 bits (146), Expect = 9e-29 Identities = 178/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 9426856 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 9426797 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| |||| Sbjct 9426796 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTTAACCT-----TTTGA-- 9426745 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 9426744 -ACTGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 9426687 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 9426686 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 9426627 Query 249 CCT 251 ||| Sbjct 9426626 CCT 9426624 >seq4 Length=41855496 Score = 132 bits (146), Expect = 9e-29 Identities = 178/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 22278356 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 22278415 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| |||| Sbjct 22278416 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTTAACCT-----TTTGA-- 22278467 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 22278468 -ACTGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 22278525 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 22278526 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 22278585 Query 249 CCT 251 ||| Sbjct 22278586 CCT 22278588 >seq1375 Length=152860 Score = 127 bits (140), Expect = 4e-27 Identities = 164/222 (74%), Gaps = 11/222 (5%) Strand=Plus/Plus Query 31 AGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGGAGTGAGCAAACACACTTTGA 90 || ||| ||||| ||||||| ||| | ||| |||||||| | ||| | | | || Sbjct 103491 AGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGGAGTT-GAAAATAAGCGTAGA 103549 Query 91 TCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATACATAG 150 |||| ||||| |||||| || |||| |||| | ||| |||||||| ||| | Sbjct 103550 TCCGGAGATTCCCGAATAGGTTAACCT-----TTTGA---ACTGC-TGCTGAATCCATGG 103600 Query 151 GTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAA 209 | | |||| || ||| ||||||||||||||||| |||||| ||||||||||| ||| Sbjct 103601 GCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAA 103660 Query 210 CCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 | ||||||| ||||| |||||||||||||||| ||||| Sbjct 103661 AAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCT 103702 Score = 127 bits (140), Expect = 4e-27 Identities = 164/222 (74%), Gaps = 11/222 (5%) Strand=Plus/Minus Query 31 AGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGGAGTGAGCAAACACACTTTGA 90 || ||| ||||| ||||||| ||| | ||| |||||||| | ||| | | | || Sbjct 132400 AGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGGAGTT-GAAAATAAGCGTAGA 132342 Query 91 TCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATACATAG 150 |||| ||||| |||||| || |||| |||| | ||| |||||||| ||| | Sbjct 132341 TCCGGAGATTCCCGAATAGGTTAACCT-----TTTGA---ACTGC-TGCTGAATCCATGG 132291 Query 151 GTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAA 209 | | |||| || ||| ||||||||||||||||| |||||| ||||||||||| ||| Sbjct 132290 GCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAA 132231 Query 210 CCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 | ||||||| ||||| |||||||||||||||| ||||| Sbjct 132230 AAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCT 132189 >seq527 Length=26230 Score = 98.7 bits (108), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 10/217 (5%) Strand=Plus/Minus Query 35 GATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGGAGTGAGCAAACACACTTTGATCCG 94 |||||||||||| | | ||||||||||| ||| || | ||| || | |||||| Sbjct 23678 GATGAAGGACGTGGCAAGCTGCGATAAGCTCGGGGTAG-GCGCACGCATCTTATGATCCC 23620 Query 95 CAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATACATAGGTA- 153 |||| ||||||| || || || |||| | | | | ||| |||| |||| Sbjct 23619 GAGATGTCCGAATAGG--AATCCTAAACTTTTGTTTACTCCAT------TACAATGGTAG 23568 Query 154 TGCAAAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGA 213 || | | ||||| | ||| |||| ||||| |||| | |||||||||||||||| || Sbjct 23567 TGGAGATCGAACCGTGGGAATTGAAGCATCTTAGTACCACGAGGAAAAGAAATCAACTGA 23508 Query 214 GATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCC 250 |||| || |||||| ||||||||||| || | |||| Sbjct 23507 GATTTCCCAAGTAGCGGCGAGCGAAAAGGAAACAGCC 23471 >seq1374 Length=221853 Score = 80.6 bits (88), Expect = 5e-13 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||||||||||| ||||| |||||||||||||| || ||||| Sbjct 120027 GCGAACTGAAACATCTAAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 120086 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 120087 GGCGAGCGAGAGCGGAT 120103 Score = 73.4 bits (80), Expect = 7e-11 Identities = 141/202 (70%), Gaps = 12/202 (6%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAA-GCTGCGG 68 ||||||| || ||| | || ||| |||| ||||||| ||| || ||| ||| Sbjct 89860 GGTGGATACCAAGGCACCCAGAGACGAGGAAGAGCGTAGTAAGCGACGAAAATGCTTCGG 89801 Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGG 128 ||||| | ||| | | | |||||| ||||| | |||| || |||| |||| Sbjct 89800 GGAGTT-GAAAATAAGCGTAGATCCGGAGATTCCGGAATAGGTTAACCT-----TTTGA- 89748 Query 129 TCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAG 187 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| | Sbjct 89747 --ACTGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAC 89691 Query 188 TAGCTGCAGGAAAAGAAATCAA 209 |||| ||||||||||| ||| Sbjct 89690 TAGCCAGAGGAAAAGAAAGCAA 89669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918387362816